ViewGene
Locus Name:
GeneID:
Location:

GeneID:5086
TrivialName: PA14_28490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28490
PAO1 Ortholog Locus:PA2754
Sequence Length:330
Protein Length:109
Start: 2458669
Stop: 2458340
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06142.1|AE004703_8 (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/109 (99%), Positives = 109/109 (100%)
Sequence:
ATGACTCTGAAAACCCGCTCCGCTCGCGCCAAGCAGGCTATCCAGGACCAGGCCATGGCCGAACTGCAGGAC
CTGATCGCCGAGGTGGACCAGTTGATGAGCGGCACCGGCAGCCTGGCCGGCAAGGAGGGCGCGAACCTGCGT
GAACAGATCAATTCCGTGCTGCATCGTGGTCGCGACGCCATCGAGCGCACCCGCCGCGGCGTGGTGCAACGC
AGCCAGGCGGCCGCCGAAGCGACCGAGGAATACGTCGAGGACCATCCCTGGCAGACCATCGCCGTCTCGGCC
GGCGCCGGCTTCCTCCTCGGCCTGCTGGTGGGCCGCCGCTAG
Translation:
MTLKTRSARAKQAIQDQAMAELQDLIAEVDQLMSGTGSLAGKEGANLREQINSVLHRGRDAIERTRRGVVQR
SQAAAEATEEYVEDHPWQTIAVSAGAGFLLGLLVGRR*
AnnotationID:5091GeneID:5086
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 10:10:45
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2754
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14283.1| (AL646060) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 108

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 34/100 (34%), Positives = 66/100 (66%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10172




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36288




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5086_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5086
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7494
                           PA2754_tr
                           translation of PA2754
                           109
                           99.08
                           99.99
                           0
                           531.0
     

     
     
192997
                           gb|AAG06142.1|AE004703_8
                           (AE004703) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           109
                           99.08
                           99.99
                           0
                           531.0
     

     






      

          
GC ORFID: 48088How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2754Glimmer Score: 

          
Start: 2495257Stop: 2495586

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2754 translation of PA2754Homolog Bit Score 209.0

          
Other Homologs:  t_PA2754 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCTGAAAACCCGCTCCGCTCGCGCCAAGCAGGCTATCCAGGACCAGGCCATGGCCGAACTGCAGGAC 
CTGATCGCCGAGGTGGACCAGTTGATGAGCGGCACCGGCAGCCTGGCCGGCAAGGAGGGCGCGAACCTGCGT 
GAACAGATCAATTCCGTGCTGCATCGTGGTCGCGACGCCATCGAGCGCACCCGCCGCGGCGTGGTGCAACGC 
AGCCAGGCGGCCGCCGAAGCGACCGAGGAATACGTCGAGGACCATCCCTGGCAGACCATCGCCGTCTCGGCC 
GGCGCCGGCTTCCTCCTCGGCCTGCTGGTGGGCCGCCGCTAG