ViewGene
Locus Name:
GeneID:
Location:

GeneID:5085
TrivialName: PA14_33830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33830
PAO1 Ortholog Locus:PA2384
Sequence Length:324
Protein Length:107
Start: 3007457
Stop: 3007780
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05772.1|AE004664_9 (AE004664) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGACCCATTCGCCCGTCAAACAGATGTTGAAGGAGGCCGGCCTGAAGATGAGCCTGGCCCGGCTGAAAGTG
ATCGATGCGCTCTGGGAAGCCTCGGGGGAGCAGGGCCGGGTGCCGATCCGCACCCTGCACCGGCGTCTCTCC
GAAACCGGTACGCCGCTGTCCCTGGTGAGCATCCGCCAGGTCCTCGGGCGCCTGGTGGAAAGCGGCCTGGTG
ACCCTCGACGAACAGGATGTCTACAGCCCCGGCAAGGCTTCCTGGGGCGGTGCCGCCGGTTCCGCGGCGCCC
GAGCGCCGCGCCGCGGCCAACGAGCAGCGGCTCTGA
Translation:
MTHSPVKQMLKEAGLKMSLARLKVIDALWEASGEQGRVPIRTLHRRLSETGTPLSLVSIRQVLGRLVESGLV
TLDEQDVYSPGKASWGGAAGSAAPERRAAANEQRL*
AnnotationID:5090GeneID:5085
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2384
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10170




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27313




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32918




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5085_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5085
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7493
                           PA2384_tr
                           translation of PA2384
                           107
                           99.99
                           99.99
                           0
                           532.0
     

     
     
192996
                           gb|AAG05772.1|AE004664_9
                           (AE004664) hypothetical protein PA2384 [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           532.0
     

     






      

          
GC ORFID: 48087How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2384Glimmer Score: 

          
Start: 1946459Stop: 1946136

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2384 translation of PA2384Homolog Bit Score 209.0

          
Other Homologs:  t_PA2384 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCATTCGCCCGTCAAACAGATGTTGAAGGAGGCCGGCCTGAAGATGAGCCTGGCCCGGCTGAAAGTG 
ATCGATGCGCTCTGGGAAGCCTCGGGGGAGCAGGGCCGGGTGCCGATCCGCACCCTGCACCGGCGTCTCTCC 
GAAACCGGTACGCCGCTGTCCCTGGTGAGCATCCGCCAGGTCCTCGGGCGCCTGGTGGAAAGCGGCCTGGTG 
ACCCTCGACGAACAGGATGTCTACAGCCCCGGCAAGGCTTCCTGGGGCGGTGCCGCCGGTTCCGCGGCGCCC 
GAGCGCCGCGCCGCGGCCAACGAGCAGCGGCTCTGA