ViewGene
Locus Name:
GeneID:
Location:

GeneID:5083
TrivialName: PA14_42830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42830
PAO1 Ortholog Locus:PA1676
Sequence Length:321
Protein Length:106
Start: 3807762
Stop: 3808082
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05065.1|AE004595_4 (AE004595) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/106 (99%), Positives = 106/106 (100%)
Sequence:
ATGAAGCTGTCCGATAGTTTCGATGCGCGCCGGCTGCGCCCGCGCCGGCCGAGAATCTGGCGCTGGCGCCTG
GCGGCGGCGTTCGCGGCCCTGGTGGCGAGCCTGGGCGTGCTGCTGTCGCTGGCCGGCACCTCGGCCTTGATC
GGCCGCCAGCCGGCTGTCGGCATGCTGCATATCGAACCCGCCGCCGGCGGCGTATTGCTGGCCCTTGGCCTG
CTGTCGCTCTGCCTCGGCGTGTTCTTCTGGCGTTTCAGCCGCCGCCGCAGCCGCCGCAACAGCGACCTGAGC
CTGTCGCCGAACCTGATGAAAAAGCGCGACTGA
Translation:
MKLSDSFDARRLRPRRPRIWRWRLAAAFAALVASLGVLLSLAGTSALIGRQPAVGMLHIEPAAGGVLLALGL
LSLCLGVFFWRFSRRRSRRNSDLSLSPNLMKKRD*
AnnotationID:5088GeneID:5083
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1676
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10166




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5083
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7489
                           PA1676_tr
                           translation of PA1676
                           106
                           99.05
                           99.99
                           0
                           531.0
     

     
     
192943
                           gb|AAG05065.1|AE004595_4
                           (AE004595) hypothetical protein PA1676 [Pseudomonas aeruginosa PAO1]
                           106
                           99.05
                           99.99
                           0
                           531.0
     

     
     
192944
                           gb|AAN67444.1|AE016371_10
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           106
                           55.66
                           68.86
                           0
                           279.0
     

     






      

          
GC ORFID: 48085How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1676Glimmer Score: 

          
Start: 1146147Stop: 1145827

          
Length: 321


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1676 translation of PA1676Homolog Bit Score 209.0

          
Other Homologs:  t_PA1676 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCTGTCCGATAGTTTCGATGCGCGCCGGCTGCGCCCGCGCCGGCCGAGAATCTGGCGCTGGCGCCTG 
GCGGCGGCGTTCGCGGCCCTGGTGGCGAGCCTGGGCGTGCTGCTGTCGCTGGCCGGCACCTCGGCCTTGATC 
GGCCGCCAGCCGGCTGTCGGCATGCTGCATATCGAACCCGCCGCCGGCGGCGTATTGCTGGCCCTTGGCCTG 
CTGTCGCTCTGCCTCGGCGTGTTCTTCTGGCGTTTCAGCCGCCGCCGCAGCCGCCGCAACAGCGACCTGAGC 
CTGTCGCCGAACCTGATGAAAAAGCGCGACTGA