ViewGene
Locus Name:
GeneID:
Location:

GeneID:5082
TrivialName: PA14_53190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53190
PAO1 Ortholog Locus:PA0857
Sequence Length:306
Protein Length:101
Start: 4715614
Stop: 4715309
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04246.1|AE004520_9 (AE004520) morphogene protein BolA [Pseudomonas aeruginosa PAO1]
Identities = 100/101 (99%), Positives = 101/101 (100%)
Sequence:
ATGAGCATGCGTGACCGTATCCAGACCGCCCTGCAGCCCCTCGATCCGCAACACGTCGAGGTGCTCGACGAG
AGCCACATGCACAGCCGCGGGCTGGAGACCCACTTCAAGGTGGTGCTGGTCAGCCCGCAGTTCGCCGGGTTG
AACGCGGTGAAGCGGCACCAGAAGGTATATGCCACCCTCGGTGGGTTGATGGGCGAGTTCCACGCCCTGGCG
CTGCATACCTTCACCCCTGAGGAGTGGAGCCAGGCTGCGGTGCCGTCCTCGCCGACCTGCCGCGGCGGGAGC
AAGCACGACATACCCTGA
Translation:
MSMRDRIQTALQPLDPQHVEVLDESHMHSRGLETHFKVVLVSPQFAGLNAVKRHQKVYATLGGLMGEFHALA
LHTFTPEEWSQAAVPSSPTCRGGSKHDIP*
AnnotationID:5087GeneID:5082
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:01
Gene Name:bolA
Confidence Code:2
GeneProduct:morphogene protein BolA
Cell Localization:()
Synonyms:PA0857
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
      CD-Length = 90 residues, 100.0% aligned
      Score = 85.8 bits (212), Expect = 2e-18






   
Genomic Context:






   
Comment:


















    ReferenceID:10164




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5082
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7488
                           PA0857_tr
                           translation of PA0857
                           101
                           99.00
                           99.99
                           0
                           532.0
     

     
     
192937
                           gb|AAG04246.1|AE004520_9
                           (AE004520) morphogene protein BolA [Pseudomonas aeruginosa PAO1]
                           101
                           99.00
                           99.99
                           0
                           532.0
     

     
     
192938
                           emb|CAB45536.1|
                           (AJ243174) BolA protein [Pseudomonas fluorescens]
                           102
                           70.58
                           81.37
                           4
                           385.0
     

     
     
192939
                           gb|AAO55253.1|
                           (AE016862) bolA protein [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           66.66
                           80.39
                           8
                           369.0
     

     
     
192940
                           gb|AAN67377.1|AE016364_2
                           (AE016780) bolA protein [Pseudomonas putida KT2440]
                           102
                           63.72
                           77.45
                           5
                           349.0
     

     






      

          
GC ORFID: 48084How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0857Glimmer Score: 

          
Start: 238293Stop: 238598

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0857 translation of PA0857Homolog Bit Score 209.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7719 (ORF: BLASTX 146.0), t_PA0857 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGCGTGACCGTATCCAGACCGCCCTGCAGCCCCTCGATCCGCAACACGTCGAGGTGCTCGACGAG 
AGCCACATGCACAGCCGCGGGCTGGAGACCCACTTCAAGGTGGTGCTGGTCAGCCCGCAGTTCGCCGGGTTG 
AACGCGGTGAAGCGGCACCAGAAGGTATATGCCACCCTCGGTGGGTTGATGGGCGAGTTCCACGCCCTGGCG 
CTGCATACCTTCACCCCTGAGGAGTGGAGCCAGGCTGCGGTGCCGTCCTCGCCGACCTGCCGCGGCGGGAGC 
AAGCACGACATACCCTGA