ViewGene

Locus Name:
GeneID:
Location:

GeneID:5080
TrivialName: PA14_68840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68840
PAO1 Ortholog Locus:PA5212
Sequence Length:330
Protein Length:109
Start: 6140030
Stop: 6140359
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08597.1|AE004934_4 (AE004934) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGCGTTCCGTCAAACTCGCCGCCGCCACCCTGGTCATCGCCGCCCTGCCGCTGGGCTCGGCCATGGCCGAT
ACCTTCTGGCGCAACATCATTTCCTCGGGTGCCACCACGGCCTCCACCTACCTGACCTTCCGCCACGACCAC
AAGCTGATCGTCGCCGCGCAGGACGACGCCGGCAGCTACATCGCCAGCGACGGCGCGATCCGCGGGCCGTAC
CTGGAAGCCGCCCTGCAGAAGCTGCGCAACGACAACCCGGACCTGCAGGCCAGCGACATGGAACTGGCCAGC
GCGATCCTCGCCGGCGGCGAGCAGTCCGCCGTCCAGCAGTAG
Translation:
MRSVKLAAATLVIAALPLGSAMADTFWRNIISSGATTASTYLTFRHDHKLIVAAQDDAGSYIASDGAIRGPY
LEAALQKLRNDNPDLQASDMELASAILAGGEQSAVQQ*
AnnotationID:5085GeneID:5080
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5212
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10160
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27303
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5080

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7486 PA5212_tr translation of PA5212 109 99.99 99.99 0 535.0
192933 gb|AAG08597.1|AE004934_4 (AE004934) hypothetical protein PA5212 [Pseudomonas aeruginosa PAO1] 109 99.99 99.99 0 535.0
192935 gb|AAN70756.1|AE016719_7 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 110 66.36 85.45 7 344.0
192934 gb|AAO53863.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 111 64.86 84.68 7 358.0
GC ORFID: 48082How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5212Glimmer Score:
Start: 5403716Stop: 5404045
Length: 330
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5212 translation of PA5212Homolog Bit Score 210.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3915 (ORF: BLASTX 144.0), t_PA5212 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTCCGTCAAACTCGCCGCCGCCACCCTGGTCATCGCCGCCCTGCCGCTGGGCTCGGCCATGGCCGAT
ACCTTCTGGCGCAACATCATTTCCTCGGGTGCCACCACGGCCTCCACCTACCTGACCTTCCGCCACGACCAC
AAGCTGATCGTCGCCGCGCAGGACGACGCCGGCAGCTACATCGCCAGCGACGGCGCGATCCGCGGGCCGTAC
CTGGAAGCCGCCCTGCAGAAGCTGCGCAACGACAACCCGGACCTGCAGGCCAGCGACATGGAACTGGCCAGC
GCGATCCTCGCCGGCGGCGAGCAGTCCGCCGTCCAGCAGTAG