ViewGene
Locus Name:
GeneID:
Location:

GeneID:508
TrivialName: PA14_35590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35590
PAO1 Ortholog Locus:PA2243
Sequence Length:1734
Protein Length:577
Start: 3163555
Stop: 3161822
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05631.1|AE004650_2 (AE004650) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 570/577 (98%), Positives = 574/577 (99%)
Sequence:
ATGACCTCTGCGGCCGTCGAGACCACCCCGCTAACCTGTGACGTGCTGGTCGTCGGCTCCGGCGCCGCCGGG
CTGGCGGCGGCGGTGACCGCGGCCTGGCACGGGCGCCGGGTAGTCCTGGTGGAGAAGGACCCGGTGTTCGGC
GGCGCCAGCGCCTGGTCCGGCGGCTGGGCCTGGTTGCCGCGCAACCCGCTGGCGCGTCGCGCCGGTATCGAG
GAGGACATCGAGCAACCGCGTACCTACCTGCGCCACGAACTGGGCGAGCGTTACGACGCCGCGCGGATCGAC
GCCTTCCTCGAAGCCTGCCCGCACATGGTGGCCTtCTtcGAGCGCCACACCCACCTGCGGTTCGTCGACGGC
AACGGCATCCCGGACATGCATGGCGACACGCCGGGCGCCGCCGAGGGCGGCCACCAGTTGGTCGCCGCGCCC
TATGACGCACGACAACTGGGCCCGCTGCTGCCGCGCCTGCGCAAGACCCTGCGGGAGACCTCGTTCATGGGC
ATGCCGATCATGGCCGGCGCCGACCTCGCCGCCTTCCTCGACCTGACCCGCTCGCTGCCGGCCTTCCTGCAT
GTCGCCCGGCGCTTTTCCAGCCACCTCTGGCACCTGCTGCGCTACGGTCGCGCCATGCACCTGGTCAATGGC
GTGGCCCTGGTAGCGCGCCTGGCCAAGTCCGCCGAAGCCCTGGGTGTGCGCCTGATCGAATCGGCGCCAGCC
CGCGAACTGCTGATGCGTGACGGCAAGGTGGTCGGCGCGCTGGTCGAGAGCGCCGAGGGACTCCTGCGCATC
GAGGCAGGCGCCGTGGTCcTGGCCTGCGGCGGCTTTCCCCATGATCCGCAGCGCCGCGCCGCgctGGCCCCT
ACCCTGGACACCCTGCTGCCGCTGCCGCCGCCGGGCTGCAACGGCGACGGCTTGcgcctGGGGGAAAGCGCC
GGCGGCCGGGTGGCCGACGACCTGCGCTCGCCGATCGCCTGGGCGCCGGTCTCGCGAGTTCCCCACGGCGAT
GGCGAGACCGGGCACTTCCCGCACATCATCGAGCGCGGCAAGCCCGGGGTGATCGGCGTACTGGCCAACGGC
AGGCGCTTCGTCAATGAGGCCCACGGTTACCACGACTATGTCGCCGCCCTGCTCGAGGCCACCCCGCCCGGG
CAGCCGGCACGCTCCTGGCTGGTCTGCGACCGGCGCTTCCTGCGCCGCTACGGCCTCGGCTACGTGCGTCCG
GCGCCGCTGCCGATCACCGCGCACCTGCGCAGCGGCTATCTCAAGCGCGGGGCCAGCCTGGATCAGTTGGCA
AGGAGCTGCGGCATCGACCCGTCCGGCCTGGCCGCCACCGTCGCCGAATACAACCGCCACGCCCGCGAGGGC
CGCGACCCAGAGTTCGGCCGCGGCGGCACGGCATTCAACCGCAAGCAGGGCGACCCGGCGTATCCGGGGCCG
AATCCCTGCGTCGCCCCCATCGAACGCGGACCGTACTACGCGGTGCAGGTCGAGCCCGGCTGCTTCGGTACC
TTCGCCGGGCTGAAGACCGACGCCCAGGCCCGCGTGCTGGACGGCGGCGGCCAGCCGATCCCCGGCCTGTAC
GCGGCGGGCGCGGACATGGCGAGTCTGTTCGCCGGCCACTATCCCGCCGGCGGCATCAACCTGGGACCGGCG
CTGACCTTCGGCTACATCGCCGGACGCCACATCGCCGGCGCCATCGGCTACGAGCAGGAGCAAGCGCAGCGC
GGTTGA
Translation:
MTSAAVETTPLTCDVLVVGSGAAGLAAAVTAAWHGRRVVLVEKDPVFGGASAWSGGWAWLPRNPLARRAGIE
EDIEQPRTYLRHELGERYDAARIDAFLEACPHMVAFFERHTHLRFVDGNGIPDMHGDTPGAAEGGHQLVAAP
YDARQLGPLLPRLRKTLRETSFMGMPIMAGADLAAFLDLTRSLPAFLHVARRFSSHLWHLLRYGRAMHLVNG
VALVARLAKSAEALGVRLIESAPARELLMRDGKVVGALVESAEGLLRIEAGAVVLACGGFPHDPQRRAALAP
TLDTLLPLPPPGCNGDGLRLGESAGGRVADDLRSPIAWAPVSRVPHGDGETGHFPHIIERGKPGVIGVLANG
RRFVNEAHGYHDYVAALLEATPPGQPARSWLVCDRRFLRRYGLGYVRPAPLPITAHLRSGYLKRGASLDQLA
RSCGIDPSGLAATVAEYNRHAREGRDPEFGRGGTAFNRKQGDPAYPGPNPCVAPIERGPYYAVQVEPGCFGT
FAGLKTDAQARVLDGGGQPIPGLYAAGADMASLFAGHYPAGGINLGPALTFGYIAGRHIAGAIGYEQEQAQR
G*
AnnotationID:517GeneID:508
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:20
Gene Name:pslM
Confidence Code:4
GeneProduct:possible succinate dehydrogenase, flavoprotein subunit
Cell Localization:()
Synonyms:PA2243
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1053
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24984173|gb|AAN68208.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
     Length=570
     Score =  879 bits (2271),  Expect = 0.0
     Identities = 425/573 (74%), Positives = 486/573 (84%), Gaps = 6/573 (1%)

gi|67088799|gb|EAM08265.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
     Length=572
     Score =  842 bits (2176),  Expect = 0.0
     Identities = 416/567 (73%), Positives = 470/567 (82%), Gaps = 5/567 (0%)

gi|68344117|gb|AAY91723.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
     Length=587
     Score =  797 bits (2058),  Expect = 0.0
     Identities = 394/570 (69%), Positives = 446/570 (78%), Gaps = 4/570 (0%)








 
Structural Features:
COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].
             CD-Length = 562 residues,  93.4% aligned
             Score =  166 bits (422), Expect = 6e-42






   
Genomic Context:






   
Comment:


















    ReferenceID:1019




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32531




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:508_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:508
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
898
                           PA2243_tr
                           translation of PA2243
                           577
                           98.78
                           99.48
                           0
                           3032.0
     

     
     
36707
                           gb|AAG05631.1|AE004650_2
                           (AE004650) hypothetical protein PA2243 [Pseudomonas aeruginosa PAO1]
                           577
                           98.78
                           99.48
                           0
                           3032.0
     

     
     
36708
                           gb|AAN68208.1|AE016454_3
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           581
                           73.32
                           83.64
                           15
                           2277.0
     

     
     
36709
                           dbj|BAC48923.1|
                           (AP005948) bll3658 [Bradyrhizobium japonicum USDA 110]
                           581
                           57.65
                           68.33
                           10
                           1681.0
     

     
     
36712
                           gb|AAN68213.1|AE016454_8
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           582
                           51.89
                           62.71
                           25
                           1425.0
     

     






      

          
GC ORFID: 43510How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2243Glimmer Score: 

          
Start: 1790361Stop: 1792094

          
Length: 1734


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2243 translation of PA2243Homolog Bit Score 1172.0

          
Other Homologs:  t_PA2243 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCTGCGGCCGTCGAGACCACCCCGCTAACCTGTGACGTGCTGGTCGTCGGCTCCGGCGCCGCCGGG 
CTGGCGGCGGCGGTGACCGCGGCCTGGCACGGGCGCCGGGTAGTCCTGGTGGAGAAGGACCCGGTGTTCGGC 
GGCGCCAGCGCCTGGTCCGGCGGCTGGGCCTGGTTGCCGCGCAACCCGCTGGCGCGTCGCGCCGGTATCGAG 
GAGGACATCGAGCAACCGCGTACCTACCTGCGCCACGAACTGGGCGAGCGTTACGACGCCGCGCGGATCGAC 
GCCTTCCTCGAAGCCTGCCCGCACATGGTGGCCTtCTtcGAGCGCCACACCCACCTGCGGTTCGTCGACGGC 
AACGGCATCCCGGACATGCATGGCGACACGCCGGGCGCCGCCGAGGGCGGCCACCAGTTGGTCGCCGCGCCC 
TATGACGCACGACAACTGGGCCCGCTGCTGCCGCGCCTGCGCAAGACCCTGCGGGAGACCTCGTTCATGGGC 
ATGCCGATCATGGCCGGCGCCGACCTCGCCGCCTTCCTCGACCTGACCCGCTCGCTGCCGGCCTTCCTGCAT 
GTCGCCCGGCGCTTTTCCAGCCACCTCTGGCACCTGCTGCGCTACGGTCGCGCCATGCACCTGGTCAATGGC 
GTGGCCCTGGTAGCGCGCCTGGCCAAGTCCGCCGAAGCCCTGGGTGTGCGCCTGATCGAATCGGCGCCAGCC 
CGCGAACTGCTGATGCGTGACGGCAAGGTGGTCGGCGCGCTGGTCGAGAGCGCCGAGGGACTCCTGCGCATC 
GAGGCAGGCGCCGTGGTCcTGGCCTGCGGCGGCTTTCCCCATGATCCGCAGCGCCGCGCCGCgctGGCCCCT 
ACCCTGGACACCCTGCTGCCGCTGCCGCCGCCGGGCTGCAACGGCGACGGCTTGcgcctGGGGGAAAGCGCC 
GGCGGCCGGGTGGCCGACGACCTGCGCTCGCCGATCGCCTGGGCGCCGGTCTCGCGAGTTCCCCACGGCGAT 
GGCGAGACCGGGCACTTCCCGCACATCATCGAGCGCGGCAAGCCCGGGGTGATCGGCGTACTGGCCAACGGC 
AGGCGCTTCGTCAATGAGGCCCACGGTTACCACGACTATGTCGCCGCCCTGCTCGAGGCCACCCCGCCCGGG 
CAGCCGGCACGCTCCTGGCTGGTCTGCGACCGGCGCTTCCTGCGCCGCTACGGCCTCGGCTACGTGCGTCCG 
GCGCCGCTGCCGATCACCGCGCACCTGCGCAGCGGCTATCTCAAGCGCGGGGCCAGCCTGGATCAGTTGGCA 
AGGAGCTGCGGCATCGACCCGTCCGGCCTGGCCGCCACCGTCGCCGAATACAACCGCCACGCCCGCGAGGGC 
CGCGACCCAGAGTTCGGCCGCGGCGGCACGGCATTCAACCGCAAGCAGGGCGACCCGGCGTATCCGGGGCCG 
AATCCCTGCGTCGCCCCCATCGAACGCGGACCGTACTACGCGGTGCAGGTCGAGCCCGGCTGCTTCGGTACC 
TTCGCCGGGCTGAAGACCGACGCCCAGGCCCGCGTGCTGGACGGCGGCGGCCAGCCGATCCCCGGCCTGTAC 
GCGGCGGGCGCGGACATGGCGAGTCTGTTCGCCGGCCACTATCCCGCCGGCGGCATCAACCTGGGACCGGCG 
CTGACCTTCGGCTACATCGCCGGACGCCACATCGCCGGCGCCATCGGCTACGAGCAGGAGCAAGCGCAGCGC 
GGTTGA