ViewGene
Locus Name:
GeneID:
Location:

GeneID:5079
TrivialName: PA14_19610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19610
PAO1 Ortholog Locus:PA3440
Sequence Length:312
Protein Length:103
Start: 1694213
Stop: 1693902
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06828.1|AE004765_1 (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 103/103 (100%), Positives = 103/103 (100%)
Sequence:
ATGACCGCAGCCAACCTCACCGAACAGCAACGCCTGGAACTCGAAGCCGCCGCCTTCCGCACCCTGGTCCAT
CATTTGCAGACCCGGAAGGACGTGCAGAACATCGACCTGATGAACCTCGCCGGTTTCTGCCGCAACTGCCTG
TCCAAGTGGTACAAGGCCGCCGCCGACGACCTCGGGGTGGAAGTCAGCAATGACCAGGCCCGCGAAGAGATC
TACGGCATGCCCTATGCCGAGTGGAAAGCCAAGTACCAGAAAGAAGCGAGCCCGGAACAACAGGCCGCCTTC
GCCAAGAGCCAGGGCAACGCCTGA
Translation:
MTAANLTEQQRLELEAAAFRTLVHHLQTRKDVQNIDLMNLAGFCRNCLSKWYKAAADDLGVEVSNDQAREEI
YGMPYAEWKAKYQKEASPEQQAAFAKSQGNA*
AnnotationID:5084GeneID:5079
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3440
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10158




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27301




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32128




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5079_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5079
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7485
                           PA3440_tr
                           translation of PA3440
                           103
                           99.99
                           99.99
                           0
                           535.0
     

     
     
192916
                           gb|AAG06828.1|AE004765_1
                           (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           103
                           99.99
                           99.99
                           0
                           535.0
     

     
     
192917
                           gb|AAL84248.1|AF458048_1
                           (AF458048) hypothetical protein [Pseudomonas syringae pv. maculicola]
                           103
                           70.87
                           82.52
                           5
                           389.0
     

     
     
192919
                           gb|AAN70206.1|AE016660_3
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           103
                           69.90
                           79.61
                           5
                           377.0
     

     
     
192918
                           gb|AAO54707.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           103
                           68.93
                           80.58
                           5
                           382.0
     

     






      

          
GC ORFID: 48081How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3440Glimmer Score: 

          
Start: 3259719Stop: 3260030

          
Length: 312


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3440 translation of PA3440Homolog Bit Score 210.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5036 (ORF: BLASTX 152.0), t_PA3440 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCAGCCAACCTCACCGAACAGCAACGCCTGGAACTCGAAGCCGCCGCCTTCCGCACCCTGGTCCAT 
CATTTGCAGACCCGGAAGGACGTGCAGAACATCGACCTGATGAACCTCGCCGGTTTCTGCCGCAACTGCCTG 
TCCAAGTGGTACAAGGCCGCCGCCGACGACCTCGGGGTGGAAGTCAGCAATGACCAGGCCCGCGAAGAGATC 
TACGGCATGCCCTATGCCGAGTGGAAAGCCAAGTACCAGAAAGAAGCGAGCCCGGAACAACAGGCCGCCTTC 
GCCAAGAGCCAGGGCAACGCCTGA