ViewGene
Locus Name:
GeneID:
Location:

GeneID:5078
TrivialName: PA14_49850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49850
PAO1 Ortholog Locus:PA1123
Sequence Length:321
Protein Length:106
Start: 4433492
Stop: 4433812
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04512.1|AE004542_8 (AE004542) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 106/106 (100%), Positives = 106/106 (100%)
Sequence:
ATGAGCATCACATCCACCGATATCTGCCAGGCCGCCGATGCCCTCAAGGGGTTCGTCGGTTTCAACCGCAAG
ACCGGCCGCTACATCGTGCGTTTCAGCGAAGACTCCTTCGGCATGGACGTAGCCGACGACAGCATCACGCCC
ACCAGCGAGTTCGTCTGGAGTTCGGTACGCGACGACGTCATGCGCCTGGGCCGCGAGCAGTTGCAGATCCTG
CTGGAACAGAACATCAACGAACGACTGAACATCGGCGAGCCGCTACTGGTCTATCTGCGCCGCCAGGACCTG
CCGGAAATCACCGCACAACGCCAGTTGCGCTGA
Translation:
MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQIL
LEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR*
AnnotationID:5083GeneID:5078
AnnotatorUID: danlee
Modification Date/Time: 2004-08-11 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1123
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10156




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5078
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7484
                           PA1123_tr
                           translation of PA1123
                           106
                           99.99
                           99.99
                           0
                           535.0
     

     
     
192914
                           gb|AAG04512.1|AE004542_8
                           (AE004542) hypothetical protein PA1123 [Pseudomonas aeruginosa PAO1]
                           106
                           99.99
                           99.99
                           0
                           535.0
     

     
     
192915
                           gb|AAN66778.1|AE016306_4
                           (AE016778) lipoprotein, putative [Pseudomonas putida KT2440]
                           172
                           41.27
                           48.83
                           66
                           353.0
     

     






      

          
GC ORFID: 48080How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1123Glimmer Score: 

          
Start: 520416Stop: 520096

          
Length: 321


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1123 translation of PA1123Homolog Bit Score 210.0

          
Other Homologs:  t_PA1123 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCACATCCACCGATATCTGCCAGGCCGCCGATGCCCTCAAGGGGTTCGTCGGTTTCAACCGCAAG 
ACCGGCCGCTACATCGTGCGTTTCAGCGAAGACTCCTTCGGCATGGACGTAGCCGACGACAGCATCACGCCC 
ACCAGCGAGTTCGTCTGGAGTTCGGTACGCGACGACGTCATGCGCCTGGGCCGCGAGCAGTTGCAGATCCTG 
CTGGAACAGAACATCAACGAACGACTGAACATCGGCGAGCCGCTACTGGTCTATCTGCGCCGCCAGGACCTG 
CCGGAAATCACCGCACAACGCCAGTTGCGCTGA