ViewGene
Locus Name:
GeneID:
Location:

GeneID:5077
TrivialName: PA14_55570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55570
PAO1 Ortholog Locus:PA0673
Sequence Length:321
Protein Length:106
Start: 4945289
Stop: 4945609
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04062.1|AE004502_5 (AE004502) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/106 (99%), Positives = 106/106 (100%)
Sequence:
ATGCACCGTTCATCGCAGGTTCTGCCGGCCCTGATCCTGGGCCTGGCCATGAACGCCACCCTGGCCGACGAG
CCGACGCCGCCGGCGAACTGCATCAACACCGAGGTCAACGGCTACCAGGCTTTGTCCTATGAATGCCTGAGC
CAGCAGATGGCCGATCCTGACAGCGCGGCCAGGGCCCGCCGCGAACAGGAGCTGGATTCCGCCGCCATCGTC
CGGCGTCCGCCAAACCAGCTCGGCCTGTACAACCAATCGGCGACGCGCATTCGCCTGGGCACCTCGTTCGGC
AACTCAGTGGAAGCGCAGCGGCCGCCTCGCTAA
Translation:
MHRSSQVLPALILGLAMNATLADEPTPPANCINTEVNGYQALSYECLSQQMADPDSAARARREQELDSAAIV
RRPPNQLGLYNQSATRIRLGTSFGNSVEAQRPPR*
AnnotationID:5082GeneID:5077
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 14:02:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0673, pigB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10154




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5077
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7483
                           PA0673_tr
                           translation of PA0673
                           106
                           99.05
                           99.99
                           0
                           535.0
     

     
     
192912
                           gb|AAG04062.1|AE004502_5
                           (AE004502) hypothetical protein PA0673 [Pseudomonas aeruginosa PAO1]
                           106
                           99.05
                           99.99
                           0
                           535.0
     

     
     
192913
                           gb|AAC15189.1|
                           (AF060193) hypothetical PigB [Pseudomonas aeruginosa]
                           106
                           99.05
                           99.99
                           0
                           535.0
     

     






      

          
GC ORFID: 48079How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0673Glimmer Score: 

          
Start: 8618Stop: 8298

          
Length: 321


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0673 translation of PA0673Homolog Bit Score 210.0

          
Other Homologs:  t_PA0673 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCGTTCATCGCAGGTTCTGCCGGCCCTGATCCTGGGCCTGGCCATGAACGCCACCCTGGCCGACGAG 
CCGACGCCGCCGGCGAACTGCATCAACACCGAGGTCAACGGCTACCAGGCTTTGTCCTATGAATGCCTGAGC 
CAGCAGATGGCCGATCCTGACAGCGCGGCCAGGGCCCGCCGCGAACAGGAGCTGGATTCCGCCGCCATCGTC 
CGGCGTCCGCCAAACCAGCTCGGCCTGTACAACCAATCGGCGACGCGCATTCGCCTGGGCACCTCGTTCGGC 
AACTCAGTGGAAGCGCAGCGGCCGCCTCGCTAA