ViewGene
Locus Name:
GeneID:
Location:

GeneID:5076
TrivialName: PA14_59850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59850
PAO1 Ortholog Locus:
Sequence Length:306
Protein Length:101
Start: 5331863
Stop: 5332168
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84158.1| (AY273869) hypothetical protein RL031 [Pseudomonas aeruginosa]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGAGCATAAAACAGCCCTTCGAATACCATGTCGAGAACATCGTCATTCCCTACAAAACCCTCACCAAGGGC
GTCGCGATGTTCAAACACAAAGAAGACACCTTGGAACCCGACGACCACGCCTTGCTCAACCCTCTGCGCTGG
GCCGAGGTCGTGCGTCTGGGCCAGGAAGGCTGGGAGCTGGTGAGCGTTCAGCCACTCATGCGGGGCGTAACC
GAGATCGGTAATCAAAACGCCCAAGGCTGGGCTTGGGGCGTCGCTCTGCCCGTCAGCTACCTGCTGTTTTTC
AAGCGCGCAACCTCATAA
Translation:
MSIKQPFEYHVENIVIPYKTLTKGVAMFKHKEDTLEPDDHALLNPLRWAEVVRLGQEGWELVSVQPLMRGVT
EIGNQNAQGWAWGVALPVSYLLFFKRATS*
AnnotationID:5081GeneID:5076
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10152




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27295




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5076
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
192911
                           gb|AAP84158.1|
                           (AY273869) hypothetical protein RL031 [Pseudomonas aeruginosa]
                           101
                           99.99
                           99.99
                           0
                           538.0
     

     






      

          
GC ORFID: 48078How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL031Glimmer Score: 

          
Start: 4595542Stop: 4595847

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL031 101 Homolog: No significant similarity () translation of RL031Homolog Bit Score 211.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene163 (ORF: BLASTX 105.0), t_RL031 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATAAAACAGCCCTTCGAATACCATGTCGAGAACATCGTCATTCCCTACAAAACCCTCACCAAGGGC 
GTCGCGATGTTCAAACACAAAGAAGACACCTTGGAACCCGACGACCACGCCTTGCTCAACCCTCTGCGCTGG 
GCCGAGGTCGTGCGTCTGGGCCAGGAAGGCTGGGAGCTGGTGAGCGTTCAGCCACTCATGCGGGGCGTAACC 
GAGATCGGTAATCAAAACGCCCAAGGCTGGGCTTGGGGCGTCGCTCTGCCCGTCAGCTACCTGCTGTTTTTC 
AAGCGCGCAACCTCATAA