ViewGene

Locus Name:
GeneID:
Location:

GeneID:5075
TrivialName: PA14_06350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06350
PAO1 Ortholog Locus:PA0488
Sequence Length:321
Protein Length:106
Start: 562402
Stop: 562082
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03877.1|AE004486_6 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/106 (96%), Positives = 102/106 (96%)
Sequence:
ATGCGCGCACTGCTGGTCGTGGCCTGCCTGTTGCTCGGCGGTTGCAGCCACTTCGCCGAAGACGACTGGCTG
GGCGAAGACAAGGCCCTGCATTTCGCCAGTTCCGCGGCCCTTACCGCGGCGGGCATGCAGATGGCCCACGAC
CGCGGCCTGCACGGTGCTCGCCAGGCACGCTTCGGCCTGAGCTTCTCGCTCGCCTTCGGCGTCGGCAAGGAA
CTCTACGACAGCCGTTCCGCCGGCAGCGGCTGGAGCTGGAAGGACCTCGCCTGGGACCTGGCCGGCGCCGCC
GCCGGCTACGGTCTCTACCAGGCCGCCGAGTGA
Translation:
MRALLVVACLLLGGCSHFAEDDWLGEDKALHFASSAALTAAGMQMAHDRGLHGARQARFGLSFSLAFGVGKE
LYDSRSAGSGWSWKDLAWDLAGAAAGYGLYQAAE*
AnnotationID:5080GeneID:5075
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane lipoprotein
Cell Localization:()
Synonyms:yfiM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5544
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN81560.1|AE016764_242 (AE016764) Hypothetical protein yfiM [Escherichia coli CFT073]
          Length = 114

 Score =  125 bits (315), Expect = 4e-29
 Identities = 57/103 (55%), Positives = 73/103 (70%)

>gb|AAL21547.1| (AE008820) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 107

 Score =  123 bits (308), Expect = 2e-28
 Identities = 57/105 (54%), Positives = 69/105 (65%)
Structural Features:
COG5544, Predicted periplasmic lipoprotein 
CD-Length = 101 residues, 100.0% aligned
Score =  107 bits (267), Expect = 4e-25
Identities = 58/102 (56%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Genomic Context:
Comment:
ReferenceID:10150
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27293
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33785
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5075_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5075

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7482 PA0488_tr translation of PA0488 106 96.22 96.22 0 537.0
192897 gb|AAG03877.1|AE004486_6 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 106 96.22 96.22 0 537.0
192899 gb|AAL21547.1| (AE008820) putative outer membrane lipoprotein [Salmonella typhimurium LT2] 107 53.27 64.48 1 308.0
192900 gb|AAO67983.1| (AE016834) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] 107 53.27 64.48 1 308.0
192901 emb|CAD05837.1| (AL627276) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] 107 53.27 64.48 1 308.0
GC ORFID: 48077How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0488Glimmer Score:
Start: 6363744Stop: 6363424
Length: 321
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0488 translation of PA0488Homolog Bit Score 211.0
Other Homologs: t_PA0488 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCGCACTGCTGGTCGTGGCCTGCCTGTTGCTCGGCGGTTGCAGCCACTTCGCCGAAGACGACTGGCTG
GGCGAAGACAAGGCCCTGCATTTCGCCAGTTCCGCGGCCCTTACCGCGGCGGGCATGCAGATGGCCCACGAC
CGCGGCCTGCACGGTGCTCGCCAGGCACGCTTCGGCCTGAGCTTCTCGCTCGCCTTCGGCGTCGGCAAGGAA
CTCTACGACAGCCGTTCCGCCGGCAGCGGCTGGAGCTGGAAGGACCTCGCCTGGGACCTGGCCGGCGCCGCC
GCCGGCTACGGTCTCTACCAGGCCGCCGAGTGA