ViewGene
Locus Name:
GeneID:
Location:

GeneID:5074
TrivialName: PA14_69020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69020
PAO1 Ortholog Locus:PA5226
Sequence Length:312
Protein Length:103
Start: 6155877
Stop: 6156188
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08611.1|AE004935_8 (AE004935) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 103/103 (100%), Positives = 103/103 (100%)
Sequence:
ATGCGACCGGTTGCCGGCGCGCCGGCCCGGCCGGGGCATTGGCCCCGACCGGGGACGATCCTATATAGTTGT
CCAATCACCCCAATTCCCAAGCGAGAGCCCATGGAAGACGCCGATCTGCAATTGTTGACGGCCAAGTTCGAC
CAGCTGCTCCAGAAGCTGGAACAGCTCAAGGCGGAGAACCGGCTGCTGCGGGCGAACGAAAAGTCCTGGCGC
GAAGAGCGCGCTCATCTGATCGAAAAGAACGAAATGGCGAGACACAAGGTCGAAGCGATGATTTTGCGTCTG
AAAGCCTTGGAGCAGGACACATGA
Translation:
MRPVAGAPARPGHWPRPGTILYSCPITPIPKREPMEDADLQLLTAKFDQLLQKLEQLKAENRLLRANEKSWR
EERAHLIEKNEMARHKVEAMILRLKALEQDT*
AnnotationID:5079GeneID:5074
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5226
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10148




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5074
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7481
                           PA5226_tr
                           translation of PA5226
                           103
                           99.99
                           99.99
                           0
                           537.0
     

     
     
192896
                           gb|AAG08611.1|AE004935_8
                           (AE004935) hypothetical protein PA5226 [Pseudomonas aeruginosa PAO1]
                           103
                           99.99
                           99.99
                           0
                           537.0
     

     






      

          
GC ORFID: 48076How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5226Glimmer Score: 

          
Start: 5419564Stop: 5419875

          
Length: 312


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5226 translation of PA5226Homolog Bit Score 211.0

          
Other Homologs:  t_PA5226 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGACCGGTTGCCGGCGCGCCGGCCCGGCCGGGGCATTGGCCCCGACCGGGGACGATCCTATATAGTTGT 
CCAATCACCCCAATTCCCAAGCGAGAGCCCATGGAAGACGCCGATCTGCAATTGTTGACGGCCAAGTTCGAC 
CAGCTGCTCCAGAAGCTGGAACAGCTCAAGGCGGAGAACCGGCTGCTGCGGGCGAACGAAAAGTCCTGGCGC 
GAAGAGCGCGCTCATCTGATCGAAAAGAACGAAATGGCGAGACACAAGGTCGAAGCGATGATTTTGCGTCTG 
AAAGCCTTGGAGCAGGACACATGA