ViewGene
Locus Name:
GeneID:
Location:

GeneID:5073
TrivialName: PA14_26060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26060
PAO1 Ortholog Locus:PA2937
Sequence Length:309
Protein Length:102
Start: 2277400
Stop: 2277092
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06325.1|AE004720_1 (AE004720) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/102 (99%), Positives = 102/102 (100%)
Sequence:
GTGGCAACCACAGGCGTCGCGCAGGTAGCCGGGTCGGCCTCCGACAGAGAGGAGCACGCCATGGCCAGCCTG
CACTGCCAGCATCGCAGCTACACCATCACCGCCGACGTCGTCGAGCATCCGGGCATTCCCACGCCCTGGGCC
GGTGGCTGCCACATCACCGATCCCGAAGGCCACACCAGCAAGCGCATCGCCCTGCCCGTGCGCTTCGCCTTC
CTCGCCAACCTGGAAAACGCCCAGCGCGCCTCCATCGCCCACGGCAAATGGCTGGTGGACCAGCGCCTGGAC
CGCGGCAAGGCGCTGTTCTGA
Translation:
MATTGVAQVAGSASDREEHAMASLHCQHRSYTITADVVEHPGIPTPWAGGCHITDPEGHTSKRIALPVRFAF
LANLENAQRASIAHGKWLVDQRLDRGKALF*
AnnotationID:5078GeneID:5073
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 12:12:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2937
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15248




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27289




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5073
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7480
                           PA2937_tr
                           translation of PA2937
                           102
                           99.01
                           99.99
                           0
                           536.0
     

     
     
192894
                           gb|AAG06325.1|AE004720_1
                           (AE004720) hypothetical protein PA2937 [Pseudomonas aeruginosa PAO1]
                           102
                           98.03
                           99.99
                           0
                           533.0
     

     
     
192895
                           gb|AAN69361.1|AE016573_6
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           102
                           45.09
                           62.74
                           22
                           253.0
     

     






      

          
GC ORFID: 48075How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2937Glimmer Score: 

          
Start: 2676525Stop: 2676833

          
Length: 309


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2937 translation of PA2937Homolog Bit Score 211.0

          
Other Homologs:  t_PA2937 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCAACCACAGGCGTCGCGCAGGTAGCCGGGTCGGCCTCCGACAGAGAGGAGCACGCCATGGCCAGCCTG 
CACTGCCAGCATCGCAGCTACACCATCACCGCCGACGTCGTCGAGCATCCGGGCATTCCCACGCCCTGGGCC 
GGTGGCTGCCACATCACCGATCCCGAAGGCCACACCAGCAAGCGCATCGCCCTGCCCGTGCGCTTCGCCTTC 
CTCGCCAACCTGGAAAACGCCCAGCGCGCCTCCATCGCCCACGGCAAATGGCTGGTGGACCAGCGCCTGGAC 
CGCGGCAAGGCGCTGTTCTGA