ViewGene

Locus Name:
GeneID:
Location:

GeneID:5072
TrivialName: PA14_44620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44620
PAO1 Ortholog Locus:PA1533
Sequence Length:327
Protein Length:108
Start: 3971443
Stop: 3971117
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04922.1|AE004581_9 (AE004581) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGATGAAAGGTGGCATGGCCGGCCTGATGAAGCAGGCGCAGCAGATGCAGGAAAAGATGCAGAAGATGCAG
GAAGAGCTGGCCAACGCGGAAGTGACCGGGCAATCCGGCGCCGGTCTGGTCAGCGTGGTGATGACCGGGCGC
CACGACGTCAAGCGCGTCAGCCTGGACGACAGCCTGATGCAGGAAGACAAGGAAATCCTCGAAGACCTGATC
GCCGCCGCGGTCAACGATGCGGTGCGCAAGATCGAGCAGAACAACCAGGAAAAGATGTCCGGCTTCACCTCG
GGCATGCAACTGCCGCCCGGCTTCAAGATGCCCTTCTGA
Translation:
MMKGGMAGLMKQAQQMQEKMQKMQEELANAEVTGQSGAGLVSVVMTGRHDVKRVSLDDSLMQEDKEILEDLI
AAAVNDAVRKIEQNNQEKMSGFTSGMQLPPGFKMPF*
AnnotationID:5077GeneID:5072
AnnotatorUID: diggins
Modification Date/Time: 2005-01-19 20:08:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL19439.1| (AE008718) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 109

 Score =  153 bits (386), Expect = 2e-37
 Identities = 72/106 (67%), Positives = 89/106 (83%)

>gb|AAN79069.1|AE016756_252 (AE016756) Hypothetical protein ybaB [Escherichia coli CFT073]
          Length = 114

 Score =  153 bits (386), Expect = 2e-37
 Identities = 72/106 (67%), Positives = 89/106 (83%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:10144
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27287
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37285
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5072_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5072

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7479 PA1533_tr translation of PA1533 108 99.99 99.99 0 538.0
192847 gb|AAG04922.1|AE004581_9 (AE004581) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 108 99.99 99.99 0 538.0
192848 gb|AAO57115.1| (AE016869) conserved hypothetical protein TIGR00103 [Pseudomonas syringae pv. tomato str. DC3000] 108 87.03 94.44 0 478.0
192849 gb|AAN69848.1|AE016623_10 (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440] 111 85.58 93.69 3 481.0
192853 emb|CAE16212.1| (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 109 67.88 83.48 1 392.0
GC ORFID: 48074How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1533Glimmer Score:
Start: 982466Stop: 982792
Length: 327
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1533 translation of PA1533Homolog Bit Score 211.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene835 (ORF: BLASTX 188.0), t_PA1533 (ORF: GLIMMER)
GC ORF Sequence
ATGATGAAAGGTGGCATGGCCGGCCTGATGAAGCAGGCGCAGCAGATGCAGGAAAAGATGCAGAAGATGCAG
GAAGAGCTGGCCAACGCGGAAGTGACCGGGCAATCCGGCGCCGGTCTGGTCAGCGTGGTGATGACCGGGCGC
CACGACGTCAAGCGCGTCAGCCTGGACGACAGCCTGATGCAGGAAGACAAGGAAATCCTCGAAGACCTGATC
GCCGCCGCGGTCAACGATGCGGTGCGCAAGATCGAGCAGAACAACCAGGAAAAGATGTCCGGCTTCACCTCG
GGCATGCAACTGCCGCCCGGCTTCAAGATGCCCTTCTGA