ViewGene

Locus Name:
GeneID:
Location:

GeneID:5070
TrivialName: PA14_47130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47130
PAO1 Ortholog Locus:PA1323
Sequence Length:333
Protein Length:110
Start: 4199140
Stop: 4198808
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04712.1|AE004561_8 (AE004561) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/110 (100%), Positives = 110/110 (100%)
Sequence:
ATGGCACGCAAAAACGCAGTGAAAGACAACCTCGAGCAGATCCAGCACCAGAGCTACAGCGAGCTGCAGGAA
CTGCTCTCCGAAGCCAACAGCATGCTCGCCGACAGCGCCGCCTTCGCCGGCGACAAGGCCGACAGCGCCCGT
GCGCGGATCGGCGCGCTGCTGGAGAAGGCCAACGATGCCCTCGGCAAGGGCGGTAGCGCCGTGGCCGAACGC
AGTCGCCACGCGGTGGATGCGACGGAAAGCTATATCGGCGCCAATCCCTGGCAGACCGTGGCCATCACCACC
GCGGTGGGCCTGCTCGCCGGCTTCCTGCTCGGGCGCCGCTCCTGA
Translation:
MARKNAVKDNLEQIQHQSYSELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAER
SRHAVDATESYIGANPWQTVAITTAVGLLAGFLLGRRS*
AnnotationID:5075GeneID:5070
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1323
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE41356.1| (BX640414) putative membrane protein [Bordetella pertussis]
          Length = 105

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 36/104 (34%), Positives = 57/104 (54%)

>emb|CAD14283.1| (AL646060) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 108

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:10140
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27283
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37446
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5070_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5070

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7476 PA1323_tr translation of PA1323 110 99.99 99.99 0 538.0
192844 gb|AAG04712.1|AE004561_8 (AE004561) hypothetical protein PA1323 [Pseudomonas aeruginosa PAO1] 110 99.99 99.99 0 538.0
GC ORFID: 48072How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1323Glimmer Score:
Start: 754769Stop: 755101
Length: 333
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1323 translation of PA1323Homolog Bit Score 211.0
Other Homologs: t_PA1323 (ORF: GLIMMER)
GC ORF Sequence
ATGGCACGCAAAAACGCAGTGAAAGACAACCTCGAGCAGATCCAGCACCAGAGCTACAGCGAGCTGCAGGAA
CTGCTCTCCGAAGCCAACAGCATGCTCGCCGACAGCGCCGCCTTCGCCGGCGACAAGGCCGACAGCGCCCGT
GCGCGGATCGGCGCGCTGCTGGAGAAGGCCAACGATGCCCTCGGCAAGGGCGGTAGCGCCGTGGCCGAACGC
AGTCGCCACGCGGTGGATGCGACGGAAAGCTATATCGGCGCCAATCCCTGGCAGACCGTGGCCATCACCACC
GCGGTGGGCCTGCTCGCCGGCTTCCTGCTCGGGCGCCGCTCCTGA