ViewGene
Locus Name:
GeneID:
Location:

GeneID:507
TrivialName: PA14_37340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37340
PAO1 Ortholog Locus:PA2108
Sequence Length:1773
Protein Length:590
Start: 3324300
Stop: 3322528
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05496.1|AE004638_6 (AE004638) probable decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 590/590 (100%), Positives = 590/590 (100%)
Sequence:
ATGTCCAGCACGGTTGCCGATCAATTGCTCGAACGCTTGAGCCAGTGGGGGGTGAAGCGCGTCTTCGGCTAC
CCCGGCGATGGCATCAACGGGATCATGGGCGCCATGGGCCGGCGCGCCGAGGCATTCGACTATATCCGCGTG
CGCCACGAGGAGATGGCGGCCTTCATGGCCGGCGCCCACGCCAAGTTCACCGGAGAGGTCGGGGTGTGCCTC
GCCACCTCGGGGCCGGGCGCGATCCACCTGCTGAACGGGCTCTACGACGCGCGCATGGATCATCAGCCGGTG
CTGGCCATCGTCGGCCAGCAGGCGGCTACCGCGTTGGGCAGCGACTACCAGCAGGAAGTCGATCTGCAGAGC
TTGTTCAAGGACGTTTCCGCCTATGTCGAGACCGTGGTCAGCCCGGCACAACTGCTCCATGTGCTGGACCGA
GCCCTGCGCGTGGCGGTCGGCGAGCGGCAGGTGGCGACGGTGATCGTGCCCAACGACGTGCAACAGATGGCG
GCCCCGAAGCGCCAGCCCCACGAGCACGGCCACGTGATGTCGGCGGTGGGCTTCGTCCAGCCGCGACCCTAC
GCGCGCGACGCCGACCTGGAAGCCGCCGCGGCGATCCTCAATCGCGGCCGGCGCGTGGCGATCCTCGCCGGT
GCCGGGGCCCTGGGCGCGCACCGGCAACTGGAAGCGGTCGCCGAGCGCCTGGCCGCCGGAGTGGCCAAGGCG
CTCCTGGGCAAGGCGGCGGTTTCCGACGACCTGCCGTACGTGACCGGCTCCATCGGTCTGCTCGGCACCCGC
GCCAGCAGCATGCTGATGGAGCATTGCGACACCCTGCTGATCGTCGGCAGCACTTTCCCCTACAGCGAGTTC
CTACCCAAGGCCGGCCAGGCGCGGGCGGTGCAGATCGACCTGTATCCGCGCAACATCGGTATCCGCTATCCG
ATCGATCAGGCCTTGCTCGGCGATGCAGGGGAAACCCTGGAGCGCCTGCTGCCGCTGCTCGAGCAGAAAAAG
CACGGCGCCTGGCGCCGCCGGGTCGAGCGGGCGGTGACGGCCAGTCGCGAGGAAGCCCGGCGCCAGGCCGAA
GAGCCAGCCGACCCGATCAACCCGCAGCGGGTATTCCGTTCCTTGTCGGAGCAACTGCCGGACGATGCGATT
CTCTGCGGCGACAGCGGCTCGCATACCAACTGGTACGCCCGCGACATCCGCATGCGCCCGGGCATGCTCGGC
TCGCTGTCGGGCAAGCTGGCGACCATGGGCAGCGGCGTGCCCTACGCCATCGCCGCCAAGCTCGCCTATCCG
CAGCGGCCGGTGGTGGCGATGGTCGGCGACGGCGCCATGCAGATGAACGGCAACGCCGAACTGGTCACCGTG
CAGCAGTACTGGCAGCGCTGGGACTCGCCGACCTTCATCGTGCTGGTGCTGAACAACGGCGATCTCAACCAG
GTGACCTGGGAGCAGCGTGCCCTGGCCGGCGACCCGGAGTTCAGCCCGGCGCAGGAAGTGATCGATTTCCCC
TACGCGCGTTATGCGGACATGCTCGGCTTCAAGGGCATCCGCGTGGATCGCCCGGAGGATATCGACGCCGCC
TGGGCCGAGGCCTTCGCCGCCGACCGCCCGGTGTTGCTGGAGGTGGTCACCGACCCGAACGTGCCGCCGCTG
CCGCCGCACATCAGTTTCGAGCAGGCCAAGCACCTGCTTGGCGCCATGCTGCAGGACGATCCCAAGCGCTGG
GGGGTGATTCGCCAGAGCGCCCGGCAGGTCCTCGCGCGGCACTGA
Translation:
MSSTVADQLLERLSQWGVKRVFGYPGDGINGIMGAMGRRAEAFDYIRVRHEEMAAFMAGAHAKFTGEVGVCL
ATSGPGAIHLLNGLYDARMDHQPVLAIVGQQAATALGSDYQQEVDLQSLFKDVSAYVETVVSPAQLLHVLDR
ALRVAVGERQVATVIVPNDVQQMAAPKRQPHEHGHVMSAVGFVQPRPYARDADLEAAAAILNRGRRVAILAG
AGALGAHRQLEAVAERLAAGVAKALLGKAAVSDDLPYVTGSIGLLGTRASSMLMEHCDTLLIVGSTFPYSEF
LPKAGQARAVQIDLYPRNIGIRYPIDQALLGDAGETLERLLPLLEQKKHGAWRRRVERAVTASREEARRQAE
EPADPINPQRVFRSLSEQLPDDAILCGDSGSHTNWYARDIRMRPGMLGSLSGKLATMGSGVPYAIAAKLAYP
QRPVVAMVGDGAMQMNGNAELVTVQQYWQRWDSPTFIVLVLNNGDLNQVTWEQRALAGDPEFSPAQEVIDFP
YARYADMLGFKGIRVDRPEDIDAAWAEAFAADRPVLLEVVTDPNVPPLPPHISFEQAKHLLGAMLQDDPKRW
GVIRQSARQVLARH*
AnnotationID:516GeneID:507
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:16
Gene Name:
Confidence Code:3
GeneProduct:glyoxylate carboligase
Cell Localization:()
Synonyms:PA2108
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative pyruvate dehydrogenase
Functional Category Confidence Code:5
COGs:COG0028
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33348.1| (BX640445) Putative pyruvate dehyrdogenase [Bordetella
           bronchiseptica]
          Length = 588

 Score =  698 bits (1802), Expect = 0.0
 Identities = 350/583 (60%), Positives = 429/583 (73%), Gaps = 2/583 (0%)

>emb|CAB76331.1| (AL939131) putative pyruvate dehydrogenase (pyruvate oxidase)
           [Streptomyces coelicolor A3(2)]
          Length = 600

 Score =  643 bits (1658), Expect = 0.0
 Identities = 326/588 (55%), Positives = 418/588 (71%), Gaps = 3/588 (0%)








 
Structural Features:
COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, 
pyruvate dehydrogenase (cytochrome), glyoxylate carboligase,
phosphonopyruvate decarboxylase] 
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 550 residues,  99.1% aligned
Score =  451 bits (1161), Expect = 1e-127
Identities = 222/568 (39%), Positives = 294/568 (51%), Gaps = 31/568 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32609




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:507_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:507
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
897
                           PA2108_tr
                           translation of PA2108
                           590
                           99.99
                           99.99
                           0
                           3031.0
     

     
     
36700
                           gb|AAG05496.1|AE004638_6
                           (AE004638) probable decarboxylase [Pseudomonas aeruginosa PAO1]
                           590
                           99.99
                           99.99
                           0
                           3031.0
     

     
     
36701
                           emb|CAE33348.1|
                           (BX640445) Putative pyruvate dehyrdogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           591
                           59.39
                           72.75
                           4
                           1802.0
     

     
     
36702
                           emb|CAE37944.1|
                           (BX640431) Putative pyruvate dehyrdogenase [Bordetella parapertussis]
                           591
                           59.05
                           72.58
                           4
                           1794.0
     

     
     
36703
                           emb|CAB76331.1|
                           (AL939131) putative pyruvate dehydrogenase (pyruvate oxidase) [Streptomyces coelicolor A3(2)]
                           602
                           54.15
                           69.60
                           14
                           1663.0
     

     






      

          
GC ORFID: 43509How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2108Glimmer Score: 

          
Start: 1629614Stop: 1631386

          
Length: 1773


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2108 translation of PA2108Homolog Bit Score 1172.0

          
Other Homologs:  t_PA2108 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGCACGGTTGCCGATCAATTGCTCGAACGCTTGAGCCAGTGGGGGGTGAAGCGCGTCTTCGGCTAC 
CCCGGCGATGGCATCAACGGGATCATGGGCGCCATGGGCCGGCGCGCCGAGGCATTCGACTATATCCGCGTG 
CGCCACGAGGAGATGGCGGCCTTCATGGCCGGCGCCCACGCCAAGTTCACCGGAGAGGTCGGGGTGTGCCTC 
GCCACCTCGGGGCCGGGCGCGATCCACCTGCTGAACGGGCTCTACGACGCGCGCATGGATCATCAGCCGGTG 
CTGGCCATCGTCGGCCAGCAGGCGGCTACCGCGTTGGGCAGCGACTACCAGCAGGAAGTCGATCTGCAGAGC 
TTGTTCAAGGACGTTTCCGCCTATGTCGAGACCGTGGTCAGCCCGGCACAACTGCTCCATGTGCTGGACCGA 
GCCCTGCGCGTGGCGGTCGGCGAGCGGCAGGTGGCGACGGTGATCGTGCCCAACGACGTGCAACAGATGGCG 
GCCCCGAAGCGCCAGCCCCACGAGCACGGCCACGTGATGTCGGCGGTGGGCTTCGTCCAGCCGCGACCCTAC 
GCGCGCGACGCCGACCTGGAAGCCGCCGCGGCGATCCTCAATCGCGGCCGGCGCGTGGCGATCCTCGCCGGT 
GCCGGGGCCCTGGGCGCGCACCGGCAACTGGAAGCGGTCGCCGAGCGCCTGGCCGCCGGAGTGGCCAAGGCG 
CTCCTGGGCAAGGCGGCGGTTTCCGACGACCTGCCGTACGTGACCGGCTCCATCGGTCTGCTCGGCACCCGC 
GCCAGCAGCATGCTGATGGAGCATTGCGACACCCTGCTGATCGTCGGCAGCACTTTCCCCTACAGCGAGTTC 
CTACCCAAGGCCGGCCAGGCGCGGGCGGTGCAGATCGACCTGTATCCGCGCAACATCGGTATCCGCTATCCG 
ATCGATCAGGCCTTGCTCGGCGATGCAGGGGAAACCCTGGAGCGCCTGCTGCCGCTGCTCGAGCAGAAAAAG 
CACGGCGCCTGGCGCCGCCGGGTCGAGCGGGCGGTGACGGCCAGTCGCGAGGAAGCCCGGCGCCAGGCCGAA 
GAGCCAGCCGACCCGATCAACCCGCAGCGGGTATTCCGTTCCTTGTCGGAGCAACTGCCGGACGATGCGATT 
CTCTGCGGCGACAGCGGCTCGCATACCAACTGGTACGCCCGCGACATCCGCATGCGCCCGGGCATGCTCGGC 
TCGCTGTCGGGCAAGCTGGCGACCATGGGCAGCGGCGTGCCCTACGCCATCGCCGCCAAGCTCGCCTATCCG 
CAGCGGCCGGTGGTGGCGATGGTCGGCGACGGCGCCATGCAGATGAACGGCAACGCCGAACTGGTCACCGTG 
CAGCAGTACTGGCAGCGCTGGGACTCGCCGACCTTCATCGTGCTGGTGCTGAACAACGGCGATCTCAACCAG 
GTGACCTGGGAGCAGCGTGCCCTGGCCGGCGACCCGGAGTTCAGCCCGGCGCAGGAAGTGATCGATTTCCCC 
TACGCGCGTTATGCGGACATGCTCGGCTTCAAGGGCATCCGCGTGGATCGCCCGGAGGATATCGACGCCGCC 
TGGGCCGAGGCCTTCGCCGCCGACCGCCCGGTGTTGCTGGAGGTGGTCACCGACCCGAACGTGCCGCCGCTG 
CCGCCGCACATCAGTTTCGAGCAGGCCAAGCACCTGCTTGGCGCCATGCTGCAGGACGATCCCAAGCGCTGG 
GGGGTGATTCGCCAGAGCGCCCGGCAGGTCCTCGCGCGGCACTGA