ViewGene
Locus Name:
GeneID:
Location:

GeneID:5069
TrivialName: PA14_17920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17920
PAO1 Ortholog Locus:PA3585
Sequence Length:330
Protein Length:109
Start: 1539897
Stop: 1539568
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06973.1|AE004779_5 (AE004779) membrane protein GlpM [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGTTCAAGGCGCTGATCGGCGCCGCCGTGGTCGTGCTCCTCGCCGTCCTGTCGAAGACCCGCAACTACTAC
ATCGCCGGCCTGGTGCCGCTGTTTCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGCCGTTCG
CTGGACGACCTGAAGACCACCATCGTCTTCGGCATGTGGTCGATCATCCCCTACTTCGTCTATCTCGCCGCG
CTCTACCTGCTGGTCGAGCGCTTCCGCCTGGAGACCTCGCTGGCCCTGGCGGCGCTGGCCTGGCTGGTGGCG
GCAAGCGTGCTGGTGGGCCTCTGGGTACGCCTGCACGCCTGA
Translation:
MFKALIGAAVVVLLAVLSKTRNYYIAGLVPLFPTFALIAHYIVGKGRSLDDLKTTIVFGMWSIIPYFVYLAA
LYLLVERFRLETSLALAALAWLVAASVLVGLWVRLHA*
AnnotationID:5074GeneID:5069
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 09:09:01
Gene Name:glpM
Confidence Code:1
GeneProduct: membrane protein GlpM
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06942,COG3136
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66690.1|AE016297_4 (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 111

 Score =  181 bits (458), Expect = 9e-46
 Identities = 87/108 (80%), Positives = 100/108 (92%)

>dbj|BAA15355.1| (D90804) Membrane protein GlpM. [Escherichia coli]
          Length = 111

 Score =  126 bits (317), Expect = 2e-29
 Identities = 58/108 (53%), Positives = 78/108 (72%)








 
Structural Features:
pfam06942, GlpM, GlpM protein.
CD-Length = 107 residues, 100.0% aligned
Score =  132 bits (333), Expect = 1e-32
Identities = 76/107 (71%), Positives = 90/107 (84%)

COG3136, GlpM, Uncharacterized membrane protein required 
for alginate biosynthesis
CD-Length = 111 residues,  97.3% aligned
Score =  124 bits (312), Expect = 4e-30
Identities = 71/108 (65%), Positives = 87/108 (80%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10138




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31957




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5069_cdd.html


    		




 
URL:

















    ReferenceID:34162




  
Author/Investigator(s):
        Schweizer HP, Po C, Bacic MK.





  
Title:
        Identification of Pseudomonas aeruginosa glpM, whose gene product is required for efficient alginate biosynthesis from various carbon sources.




  
PubMed:
        7642508


MedLine:
        




    
Source:
J Bacteriol. 1995 Aug;177(16):4801-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7642508









           
Homologs By Global Alignment 

           

       



     
Gene ID:5069
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7475
                           PA3585_tr
                           translation of PA3585
                           109
                           99.99
                           99.99
                           0
                           540.0
     

     
     
192824
                           gb|AAG06973.1|AE004779_5
                           (AE004779) membrane protein GlpM [Pseudomonas aeruginosa PAO1]
                           109
                           99.99
                           99.99
                           0
                           540.0
     

     
     
192825
                           gb|AAA81585.1|
                           (L06231) membrane protein [Pseudomonas aeruginosa]
                           109
                           99.99
                           99.99
                           0
                           540.0
     

     
     
192826
                           gb|AAN66690.1|AE016297_4
                           (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
                           112
                           77.67
                           89.28
                           4
                           458.0
     

     
     
192832
                           emb|CAD01891.1|
                           (AL627271) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi]
                           112
                           54.46
                           71.42
                           4
                           325.0
     

     






      

          
GC ORFID: 48071How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3585Glimmer Score: 

          
Start: 3414039Stop: 3414368

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3585 translation of PA3585Homolog Bit Score 212.0

          
Other Homologs:  t_PA3585 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAGGCGCTGATCGGCGCCGCCGTGGTCGTGCTCCTCGCCGTCCTGTCGAAGACCCGCAACTACTAC 
ATCGCCGGCCTGGTGCCGCTGTTTCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGCCGTTCG 
CTGGACGACCTGAAGACCACCATCGTCTTCGGCATGTGGTCGATCATCCCCTACTTCGTCTATCTCGCCGCG 
CTCTACCTGCTGGTCGAGCGCTTCCGCCTGGAGACCTCGCTGGCCCTGGCGGCGCTGGCCTGGCTGGTGGCG 
GCAAGCGTGCTGGTGGGCCTCTGGGTACGCCTGCACGCCTGA