ViewGene

Locus Name:
GeneID:
Location:

GeneID:5068
TrivialName: PA14_24770
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:45
LocusName:PA14_24770
PAO1 Ortholog Locus:PA3040
Sequence Length:330
Protein Length:109
Start: 2165545
Stop: 2165216
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06428.1|AE004729_2 (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGCCCCGCAAGACCACTGCAAACGCTGCAAAGGATGAACTGTTGGCTGAATTCCAGGCACTGGTCGCCGAT
ACCGAGAAACTCCTGCAAAGCACCGCCGACGTGGCGGGCGACCAGGCGGAAGAAATCCGCGGCAAGATCCAC
GACAGCCTCAAGCGCGCTCGCGACACCTTGCGCGACACCAAGGACTCGCTGAAGGACAACGTCCGCGAACGC
AGCCAGGCCGCGGTGGACGCCACCGAGGTGTACGTCGGCGAACACCCCTGGCAGAGCATCGGCATCGCCGCC
GGCGTCGGCTTCCTGCTTGGCCTGTTGGTCAGCCGGCGCTGA
Translation:
MPRKTTANAAKDELLAEFQALVADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRER
SQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLVSRR*
AnnotationID:5073GeneID:5068
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3040
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10136
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27279
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36010
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5068_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5068

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7474 PA3040_tr translation of PA3040 109 99.99 99.99 0 539.0
192821 gb|AAG06428.1|AE004729_2 (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 109 99.99 99.99 0 539.0
192822 gb|AAO55846.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 109 61.46 77.98 5 313.0
192823 gb|AAN67719.1|AE016403_4 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 109 57.79 77.98 5 297.0
GC ORFID: 48070How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3040Glimmer Score:
Start: 2788383Stop: 2788712
Length: 330
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3040 translation of PA3040Homolog Bit Score 212.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene346 (ORF: BLASTX 123.0), t_PA3040 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCCGCAAGACCACTGCAAACGCTGCAAAGGATGAACTGTTGGCTGAATTCCAGGCACTGGTCGCCGAT
ACCGAGAAACTCCTGCAAAGCACCGCCGACGTGGCGGGCGACCAGGCGGAAGAAATCCGCGGCAAGATCCAC
GACAGCCTCAAGCGCGCTCGCGACACCTTGCGCGACACCAAGGACTCGCTGAAGGACAACGTCCGCGAACGC
AGCCAGGCCGCGGTGGACGCCACCGAGGTGTACGTCGGCGAACACCCCTGGCAGAGCATCGGCATCGCCGCC
GGCGTCGGCTTCCTGCTTGGCCTGTTGGTCAGCCGGCGCTGA