ViewGene

Locus Name:
GeneID:
Location:

GeneID:5067
TrivialName: PA14_60060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60060
PAO1 Ortholog Locus:
Sequence Length:303
Protein Length:100
Start: 5347532
Stop: 5347834
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84137.1| (AY273869) hypothetical protein RL010 [Pseudomonas aeruginosa]
Identities = 100/100 (100%), Positives = 100/100 (100%)
Sequence:
GTGCGGAGAGATCTCCTCAAACTGATGGGTTGCACGCATATCGAAGCAGATTACATAGGAGGCTTGCGCTGT
TCAACAGCTCCTGAGGGGACTTGGGTTGCCCATGGTTTCCACGGCCCAATCGTTGACGTCATTGACGATTCC
GCTGGCTTTTTCAGTACGCATCGCTTGGCGCTCCATTACCCAGCCCAATGCGGCCTTGCCGTTGACCAAGCG
ATTCCAAGGACTGCGATCCATGTAGCCAGCCCTCTAATGCATGTATGTATAGGTAAGGTCGTCGTTATTTCG
GCGTGGATGTGCTGA
Translation:
MRRDLLKLMGCTHIEADYIGGLRCSTAPEGTWVAHGFHGPIVDVIDDSAGFFSTHRLALHYPAQCGLAVDQA
IPRTAIHVASPLMHVCIGKVVVISAWMC*
AnnotationID:5072GeneID:5067
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15246
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27277
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5067

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
192820 gb|AAP84137.1| (AY273869) hypothetical protein RL010 [Pseudomonas aeruginosa] 100 99.00 99.99 0 540.0
GC ORFID: 48069How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL010Glimmer Score:
Start: 4611211Stop: 4611513
Length: 303
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL010 100 Homolog: No significant similarity () translation of RL010Homolog Bit Score 213.0
Other Homologs:
GC ORF Sequence
GTGCGGAGAGATCTCCTCAAACTGATGGGTTGCACGCATATCGAAGCAGATTACATAGGAGGCTTGCGCTGT
TCAACAGCTCCTGAGGGGACTTGGGTTGCCCATGGTTTCCACGGCCCAATCGTTGACGTCATTGACGATTCC
GCTGGCTTTTTCAGTACGCATCGCTTGGCGCTCCATTACCCAGCCCAATGCGGCCTTGCCGTTGACCAAGCG
ATTCCAAGGACTGCGATCCATGTAGCCAGCCCTCTAATGCATGTATGTATAGGTAAGGTCGTCGTTATTTCG
GCGTGGATGTGCTGA