ViewGene
Locus Name:
GeneID:
Location:

GeneID:5066
TrivialName: PA14_05030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05030
PAO1 Ortholog Locus:PA0385
Sequence Length:324
Protein Length:107
Start: 442241
Stop: 441918
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03774.1|AE004476_4 (AE004476) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGGATTACGCGCTGGACCTGATCGCCACCCTGTCGCGCTGGAGCCGCAGCCACCTGTCGGACATTTCCCTG
GCCATCATGGCCACCCTGCTGGTGCTGTTCGGCCCGGCGATCAACGCCTGGGTACAGCAGCGCATCGGCAGC
CTCAACTTCGTCTTCCGCACCCTGCTGTTCGTGTTGATCTGCGCGGTCGGCTACGGCCTGGCGATGGTCTTC
GTCACCCCCTGGCTGGCCAAGGGCCTCGGCTACTTCAACAACTACACCCTGGCGCCCGTGCTCCTGCTAGTG
TTCTTCGTGATCGGCATGATCGCCGATCGCAGCTGA
Translation:
MDYALDLIATLSRWSRSHLSDISLAIMATLLVLFGPAINAWVQQRIGSLNFVFRTLLFVLICAVGYGLAMVF
VTPWLAKGLGYFNNYTLAPVLLLVFFVIGMIADRS*
AnnotationID:5071GeneID:5066
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0385
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10132




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27275




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5066
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7473
                           PA0385_tr
                           translation of PA0385
                           107
                           99.99
                           99.99
                           0
                           542.0
     

     
     
192817
                           gb|AAG03774.1|AE004476_4
                           (AE004476) hypothetical protein PA0385 [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           542.0
     

     
     
192818
                           gb|AAO58481.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           107
                           56.07
                           75.70
                           0
                           327.0
     

     
     
192819
                           gb|AAN70667.1|AE016710_12
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           108
                           53.70
                           71.29
                           1
                           312.0
     

     






      

          
GC ORFID: 48068How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0385Glimmer Score: 

          
Start: 6243583Stop: 6243260

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0385 translation of PA0385Homolog Bit Score 213.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3725 (ORF: BLASTX 130.0), t_PA0385 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTACGCGCTGGACCTGATCGCCACCCTGTCGCGCTGGAGCCGCAGCCACCTGTCGGACATTTCCCTG 
GCCATCATGGCCACCCTGCTGGTGCTGTTCGGCCCGGCGATCAACGCCTGGGTACAGCAGCGCATCGGCAGC 
CTCAACTTCGTCTTCCGCACCCTGCTGTTCGTGTTGATCTGCGCGGTCGGCTACGGCCTGGCGATGGTCTTC 
GTCACCCCCTGGCTGGCCAAGGGCCTCGGCTACTTCAACAACTACACCCTGGCGCCCGTGCTCCTGCTAGTG 
TTCTTCGTGATCGGCATGATCGCCGATCGCAGCTGA