ViewGene
Locus Name:
GeneID:
Location:

GeneID:5065
TrivialName: PA14_62690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62690
PAO1 Ortholog Locus:PA4739
Sequence Length:345
Protein Length:114
Start: 5595030
Stop: 5594686
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08125.1|AE004887_9 (AE004887) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGAAATTCAGCAAACTCGCTATTGCCGCTGCTACTGCCACTGCTCTGAGCTTCTCGATGGCCAATGCGTTC
GCTGCCCAGCCCATCAGCCTGGCGGCCAACGACACTATGCAGAAAACCGAAGAAGCGGTTTCCGATACCTGG
ATCACCAGCAAGGTGAAATCCAGCCTGATCGCCAACAAGAATGTCAGTGGCGTCGATATCAAGGTCGAGACC
AACAAAGGTGTGGTTTCCCTTTCCGGCAACGTGAAGAGCGATGCCGAGCGTGACCTGGCGATCGAGACCGCC
AAGGGCATCAAGGGCGTGAAAGCCGTTTCCGCCGATGGCCTGAAATCGGTCGAGTAA
Translation:
MKFSKLAIAAATATALSFSMANAFAAQPISLAANDTMQKTEEAVSDTWITSKVKSSLIANKNVSGVDIKVET
NKGVVSLSGNVKSDAERDLAIETAKGIKGVKAVSADGLKSVE*
AnnotationID:5070GeneID:5065
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4739
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70280.1|AE016668_6 (AE016791) osmY-related protein [Pseudomonas putida KT2440]
          Length = 116

 Score =  106 bits (265), Expect = 2e-23
 Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 7/114 (6%)

>gb|AAM87293.1|AE013978_5 (AE013978) hyperosmotically inducible periplasmic protein [Yersinia
           pestis KIM]
          Length = 204

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 9/114 (7%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10130




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27273




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37656




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5065_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5065
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7472
                           PA4739_tr
                           translation of PA4739
                           114
                           99.99
                           99.99
                           0
                           541.0
     

     
     
192814
                           gb|AAG08125.1|AE004887_9
                           (AE004887) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           114
                           99.99
                           99.99
                           0
                           541.0
     

     
     
192815
                           gb|AAO57933.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           120
                           55.83
                           68.33
                           9
                           295.0
     

     
     
192816
                           gb|AAN70280.1|AE016668_6
                           (AE016791) osmY-related protein [Pseudomonas putida KT2440]
                           120
                           51.66
                           70.83
                           10
                           272.0
     

     






      

          
GC ORFID: 48067How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4739Glimmer Score: 

          
Start: 4858710Stop: 4858366

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4739 translation of PA4739Homolog Bit Score 213.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5498 (ORF: BLASTX 104.0), t_PA4739 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATTCAGCAAACTCGCTATTGCCGCTGCTACTGCCACTGCTCTGAGCTTCTCGATGGCCAATGCGTTC 
GCTGCCCAGCCCATCAGCCTGGCGGCCAACGACACTATGCAGAAAACCGAAGAAGCGGTTTCCGATACCTGG 
ATCACCAGCAAGGTGAAATCCAGCCTGATCGCCAACAAGAATGTCAGTGGCGTCGATATCAAGGTCGAGACC 
AACAAAGGTGTGGTTTCCCTTTCCGGCAACGTGAAGAGCGATGCCGAGCGTGACCTGGCGATCGAGACCGCC 
AAGGGCATCAAGGGCGTGAAAGCCGTTTCCGCCGATGGCCTGAAATCGGTCGAGTAA