ViewGene
Locus Name:
GeneID:
Location:

GeneID:5064
TrivialName: PA14_22480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22480
PAO1 Ortholog Locus:PA3224
Sequence Length:318
Protein Length:105
Start: 1956753
Stop: 1957070
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06612.1|AE004745_9 (AE004745) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/105 (100%), Positives = 105/105 (100%)
Sequence:
ATGAAAAGGCTTTGCTGTTTCGCACTATCGCTGCTGCCCCTGTCCGCTTTCGCCTATCCGATCGAGGTCGAC
CCGCAACTCAACGGCACCGAGGTCTCCTACAGCACTCAGGACATCGGTCGCGACATGGGCGCCATCCTCCTC
ACCAACCTGGGTGGCCAGGCGGCGGAATGCACGGCGGTGTTCCGCAACGGCCCGGAGACCCCGAAAGTGCGC
AAGGGCGTGATCCAGCCCGGGCAGAACAGCAACTTCACCGCGCAGTTCGGCCGCGACATCATCAAGTTGCGG
ATCAAGCTGACCTGCAAGATCGCGAAATAG
Translation:
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVR
KGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK*
AnnotationID:5069GeneID:5064
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3224
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10128




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5064
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7471
                           PA3224_tr
                           translation of PA3224
                           105
                           99.99
                           99.99
                           0
                           542.0
     

     
     
192813
                           gb|AAG06612.1|AE004745_9
                           (AE004745) hypothetical protein PA3224 [Pseudomonas aeruginosa PAO1]
                           105
                           99.99
                           99.99
                           0
                           542.0
     

     






      

          
GC ORFID: 48066How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3224Glimmer Score: 

          
Start: 2997178Stop: 2996861

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3224 translation of PA3224Homolog Bit Score 213.0

          
Other Homologs:  t_PA3224 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAGGCTTTGCTGTTTCGCACTATCGCTGCTGCCCCTGTCCGCTTTCGCCTATCCGATCGAGGTCGAC 
CCGCAACTCAACGGCACCGAGGTCTCCTACAGCACTCAGGACATCGGTCGCGACATGGGCGCCATCCTCCTC 
ACCAACCTGGGTGGCCAGGCGGCGGAATGCACGGCGGTGTTCCGCAACGGCCCGGAGACCCCGAAAGTGCGC 
AAGGGCGTGATCCAGCCCGGGCAGAACAGCAACTTCACCGCGCAGTTCGGCCGCGACATCATCAAGTTGCGG 
ATCAAGCTGACCTGCAAGATCGCGAAATAG