ViewGene
Locus Name:
GeneID:
Location:

GeneID:5063
TrivialName: PA14_28410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28410
PAO1 Ortholog Locus:PA2759
Sequence Length:315
Protein Length:104
Start: 2454266
Stop: 2454580
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06147.1|AE004704_1 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGAAGATTCTTATCGCTGTATTCGCCGCCCTGGCCCTCTCCGCCTGTGCCTCGCCTCCCGCTTCGAACGCC
CCGGCGCTGGCCGCCAGCACCAGCAAGGCTCCCTACGATTACGCGATGTGCGTCTTGCCCAAGTGGCAACGC
CAGGCGCCGGGCGTGGCGCTGGTGGAGGAAGGCCGCGGCTATCGCCTGGCGGACGCTGGGCAGTGGCTGGAG
GTGCAGCCGGCGAGGGGTGGCAGCCTGGTGCGAATCCATGACCAGCAGCCCTGGGTCACCCGCGGGGCCTTC
ATCGATGCGGCCAGGACCTGTTCCTGA
Translation:
MKILIAVFAALALSACASPPASNAPALAASTSKAPYDYAMCVLPKWQRQAPGVALVEEGRGYRLADAGQWLE
VQPARGGSLVRIHDQQPWVTRGAFIDAARTCS*
AnnotationID:5068GeneID:5063
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2759
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10126




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27269




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5063
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7470
                           PA2759_tr
                           translation of PA2759
                           104
                           99.99
                           99.99
                           0
                           541.0
     

     
     
192812
                           gb|AAG06147.1|AE004704_1
                           (AE004704) hypothetical protein PA2759 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           541.0
     

     






      

          
GC ORFID: 48065How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2759Glimmer Score: 

          
Start: 2499660Stop: 2499346

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2759 translation of PA2759Homolog Bit Score 213.0

          
Other Homologs:  t_PA2759 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATTCTTATCGCTGTATTCGCCGCCCTGGCCCTCTCCGCCTGTGCCTCGCCTCCCGCTTCGAACGCC 
CCGGCGCTGGCCGCCAGCACCAGCAAGGCTCCCTACGATTACGCGATGTGCGTCTTGCCCAAGTGGCAACGC 
CAGGCGCCGGGCGTGGCGCTGGTGGAGGAAGGCCGCGGCTATCGCCTGGCGGACGCTGGGCAGTGGCTGGAG 
GTGCAGCCGGCGAGGGGTGGCAGCCTGGTGCGAATCCATGACCAGCAGCCCTGGGTCACCCGCGGGGCCTTC 
ATCGATGCGGCCAGGACCTGTTCCTGA