ViewGene
Locus Name:
GeneID:
Location:

GeneID:5062
TrivialName: PA14_06740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06740
PAO1 Ortholog Locus:PA0518
Sequence Length:315
Protein Length:104
Start: 588320
Stop: 588006
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03907.1|AE004488_11 (AE004488) cytochrome c-551 precursor [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGAAACCGTACGCACTGCTTTCGCTGCTCGCCACCGGCACCCTGCTCGCCCAGGGCGCCTGGGCCGAAGAC
CCCGAAGTGCTGTTCAAGAACAAGGGCTGCGTGGCCTGCCATGCCATCGACACCAAGATGGTCGGCCCGGCC
TACAAGGACGTCGCCGCCAAGTTCGCCGGCCAGGCCGGCGCCGAAGCGGAACTCGCGCAGCGGATCAAGAAC
GGCAGCCAGGGCGTCTGGGGCCCGATCCCGATGCCGCCGAACGCGGTCAGCGACGACGAGGCGCAGACCCTG
GCGAAGTGGGTCCTGTCGCAGAAATGA
Translation:
MKPYALLSLLATGTLLAQGAWAEDPEVLFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKN
GSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQK*
AnnotationID:5067GeneID:5062
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:17
Gene Name:nirM
Confidence Code:1
GeneProduct:cytochrome c-551 precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4654
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA40153.1| (X56813) pseudomonas cytochrome c-551 [Pseudomonas stutzeri]
          Length = 104

 Score =  127 bits (319), Expect = 1e-29
 Identities = 65/100 (65%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

>gb|AAG34382.1|AF197466_5 (AF197466) cytochrome c-551; NirM [Pseudomonas fluorescens]
          Length = 102

 Score =  115 bits (288), Expect = 5e-26
 Identities = 60/104 (57%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

>gb|AAQ16651.1| (AY279525) cytochrome c [Pseudomonas putida]
          Length = 103

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 45/89 (50%), Positives = 63/89 (70%)








 
Structural Features:
COG4654, Cytochrome c551/c552 [Energy production and conversion]
CD-Length = 110 residues,  96.4% aligned
Score =  117 bits (293), Expect = 3e-28
Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 2/106 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10124




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27266




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33826




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5062_cdd.html


    		




 
URL:

















    ReferenceID:35302




  
Author/Investigator(s):
        Hasegawa N, Arai H, Igarashi Y.





  
Title:
        Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase.




  
PubMed:
        11700043


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 2001 Nov 16;288(5):1223-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700043









           
Homologs By Global Alignment 

           

       



     
Gene ID:5062
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7469
                           PA0518_tr
                           translation of PA0518
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192806
                           gb|AAG03907.1|AE004488_11
                           (AE004488) cytochrome c-551 precursor [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192807
                           emb|CAA35958.1|
                           (X51631) cytochrome c-551 [Pseudomonas aeruginosa]
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192808
                           emb|CAA35703.1|
                           (X51319) unnamed protein product [Pseudomonas aeruginosa]
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192809
                           emb|CAA40153.1|
                           (X56813) pseudomonas cytochrome c-551 [Pseudomonas stutzeri]
                           104
                           61.53
                           72.11
                           0
                           319.0
     

     






      

          
GC ORFID: 48064How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0518Glimmer Score: 

          
Start: 6389662Stop: 6389348

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0518 translation of PA0518Homolog Bit Score 214.0

          
Other Homologs:  t_PA0518 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCGTACGCACTGCTTTCGCTGCTCGCCACCGGCACCCTGCTCGCCCAGGGCGCCTGGGCCGAAGAC 
CCCGAAGTGCTGTTCAAGAACAAGGGCTGCGTGGCCTGCCATGCCATCGACACCAAGATGGTCGGCCCGGCC 
TACAAGGACGTCGCCGCCAAGTTCGCCGGCCAGGCCGGCGCCGAAGCGGAACTCGCGCAGCGGATCAAGAAC 
GGCAGCCAGGGCGTCTGGGGCCCGATCCCGATGCCGCCGAACGCGGTCAGCGACGACGAGGCGCAGACCCTG 
GCGAAGTGGGTCCTGTCGCAGAAATGA