ViewGene
Locus Name:
GeneID:
Location:

GeneID:5061
TrivialName: PA14_60560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60560
PAO1 Ortholog Locus:PA4577
Sequence Length:327
Protein Length:108
Start: 5398398
Stop: 5398072
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07965.1|AE004871_5 (AE004871) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGAGCGCTTTCGACCCCGCTACCGCCCTGGAAACCCTGGCGACCGAGTACGCGGCACGCGCCGCGGCGATC
CGCCGGGACCTGGCGCGCAGCCATTCGCCGGACTTTGCCGAGCAGGCGGTGCAGCGCCAGAACGACGAAGTG
CTCGAAGGCCTGCTCGCCGAGGCGGAGGCGGGGATGCGCCAGGTCGGCCTGGCCCGCCTGCGCCTGGCGGAA
GGTCGCTACGGCCAGTGCGAGCGCTGTGGCGAGGCTATCGAACCGGCGCGCCTGGCCGCCCTGCCTGCGGCG
GAATACTGCCTGCGCTGCGCCGACCTGGTACATCGGTGA
Translation:
MSAFDPATALETLATEYAARAAAIRRDLARSHSPDFAEQAVQRQNDEVLEGLLAEAEAGMRQVGLARLRLAE
GRYGQCERCGEAIEPARLAALPAAEYCLRCADLVHR*
AnnotationID:5066GeneID:5061
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 19:07:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4577
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1734
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL41919.1| (AE009056) dnaK suppressor protein [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 112

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 31/88 (35%), Positives = 45/88 (51%)






 
Structural Features:
COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]
CD-Length = 120 residues,  90.0% aligned
Score = 71.2 bits (174), Expect = 4e-14
Identities = 31/108 (28%), Positives = 42/108 (38%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10122




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27264




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31639




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5061_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5061
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7468
                           PA4577_tr
                           translation of PA4577
                           108
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192805
                           gb|AAG07965.1|AE004871_5
                           (AE004871) hypothetical protein PA4577 [Pseudomonas aeruginosa PAO1]
                           108
                           99.99
                           99.99
                           0
                           544.0
     

     






      

          
GC ORFID: 48063How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4577Glimmer Score: 

          
Start: 4662078Stop: 4661752

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4577 translation of PA4577Homolog Bit Score 214.0

          
Other Homologs:  t_PA4577 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTTTCGACCCCGCTACCGCCCTGGAAACCCTGGCGACCGAGTACGCGGCACGCGCCGCGGCGATC 
CGCCGGGACCTGGCGCGCAGCCATTCGCCGGACTTTGCCGAGCAGGCGGTGCAGCGCCAGAACGACGAAGTG 
CTCGAAGGCCTGCTCGCCGAGGCGGAGGCGGGGATGCGCCAGGTCGGCCTGGCCCGCCTGCGCCTGGCGGAA 
GGTCGCTACGGCCAGTGCGAGCGCTGTGGCGAGGCTATCGAACCGGCGCGCCTGGCCGCCCTGCCTGCGGCG 
GAATACTGCCTGCGCTGCGCCGACCTGGTACATCGGTGA