ViewGene
Locus Name:
GeneID:
Location:

GeneID:5060
TrivialName: PA14_38170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38170
PAO1 Ortholog Locus:PA2038
Sequence Length:315
Protein Length:104
Start: 3404760
Stop: 3405074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05426.1|AE004630_3 (AE004630) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGGTCTGGGCAGTGATCTTCGGGATGGGCGCGATCGTCTTCCTCAACCGCTACCTGTTCCTCGAACCGCGC
CTGCCGATCCGCCTCGGCAGCAACCTGCGGCAGTTCCTCGGTTTCGCCGTGCCGGGAATGCTCACGGCGATC
TGCGGCCCCATCGTGTTCATGCCCGAGGGCCGCATCGACCTCGGCTACGACAATCCCTACCTGGTCAGCGGC
GCAGTCACCGTGGCGCTGGTGCTCTATACCCGCAATACCCTGGCGAGCATGCTGCTGGGCATGGCGTTCTTC
TTCCTGTTCAAGTGGTGGCTGATTTGA
Translation:
MVWAVIFGMGAIVFLNRYLFLEPRLPIRLGSNLRQFLGFAVPGMLTAICGPIVFMPEGRIDLGYDNPYLVSG
AVTVALVLYTRNTLASMLLGMAFFFLFKWWLI*
AnnotationID:5065GeneID:5060
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2038
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4392
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4392, COG4392, Predicted membrane protein
CD-Length = 107 residues,  96.3% aligned
Score = 94.1 bits (234), Expect = 2e-21
Identities = 47/103 (45%), Positives = 66/103 (64%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10120




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27262




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32663




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5060_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5060
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7467
                           PA2038_tr
                           translation of PA2038
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192802
                           gb|AAG05426.1|AE004630_3
                           (AE004630) hypothetical protein PA2038 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192803
                           gb|AAN67997.1|AE016432_6
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           104
                           66.34
                           77.88
                           0
                           366.0
     

     
     
192804
                           gb|AAN54813.1|AE015620_5
                           (AE015620) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           104
                           47.11
                           64.42
                           4
                           269.0
     

     






      

          
GC ORFID: 48062How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2038Glimmer Score: 

          
Start: 1549150Stop: 1548836

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2038 translation of PA2038Homolog Bit Score 214.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTCTGGGCAGTGATCTTCGGGATGGGCGCGATCGTCTTCCTCAACCGCTACCTGTTCCTCGAACCGCGC 
CTGCCGATCCGCCTCGGCAGCAACCTGCGGCAGTTCCTCGGTTTCGCCGTGCCGGGAATGCTCACGGCGATC 
TGCGGCCCCATCGTGTTCATGCCCGAGGGCCGCATCGACCTCGGCTACGACAATCCCTACCTGGTCAGCGGC 
GCAGTCACCGTGGCGCTGGTGCTCTATACCCGCAATACCCTGGCGAGCATGCTGCTGGGCATGGCGTTCTTC 
TTCCTGTTCAAGTGGTGGCTGATTTGA