ViewGene
Locus Name:
GeneID:
Location:

GeneID:506
TrivialName: PA14_09630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09630
PAO1 Ortholog Locus:PA4199
Sequence Length:1782
Protein Length:593
Start: 828919
Stop: 827138
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07586.1|AE004836_5 (AE004836) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/593 (99%), Positives = 591/593 (99%)
Sequence:
ATGCCTGAATACAACGCCCCGCTGCGCGACATGCGCTTCCTGCTCAACGACGTGTTCGACGCCCCCGCCCTG
TGGCAGCGCCTGCCGCGACTGGCCGAGCGGATCGACGCCGACACCGCCGACGCCATCCTCGAGGAAGCGGCC
AAGGTCACCGGCGGCCTGCTCGCGCCGCTCAACCGCAGTGGCGACGAAGAAGGCGCGCAGTGGCAGGACGGC
GCCGTGCGCACCCCGGCCGGCTTCCGCGAGGCCTACGCGACCTACGCCGAGGGCGGCTGGGTCGGCCTCACC
GGCAATCCGGCCCATGGCGGCATGGGCATGCCGAAGATGCTGGCAGTGCAGTTCGAGGAGATGATGTACGCG
GCCAACGCCAGCTTCAGCCTCTACTCGACCCTTTCCGCCGGCGCCTGCCTGGCCCTCGATGCGCACGGCAGC
GAGGAGCTGAAGAACAGGTACCTGCCGAACATGTACGCCGGCACCTGGGCCGGCTCCATGTGTCTGACCGAA
CCGCATGCCGGCACCGACCTGGGCATCATCCGCACCAAGGCCGAGCCGCAGGCCGACGGTTCCTACAGGATC
AGCGGGACGAAGATCTTCATCACCGGCGGCGAACAGGACCTCACCGAGAACATCATTCACCTGGTGCTGGCC
AAGCTGCCCGACGCGCCGGCCGGTTCGCGCGGCATCTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCGGCGAC
GACGGCGCGCTCGGCGCACGCAACGCGGTGCACTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG
GCCACCTGCGTGATGAACTTCGACGGCGCCAGTGGCTGGCTGGTCGGCGAAGTCAACAAGGGCCTGGCGGCG
ATGTTCACCATGATGAACTACGAGCGCCTGTCCATCGGCATCCAGGGCATCGGCTGCGCCGAGATGTCCTAC
CAGAGCGCCGTCGCCTACGCCCGCGAGCGCCTGCAAAGCCGCGCGCCGACCGGCCCGGTGGCCAGGGACAAG
GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGACCGAGGGC
GGCCGCGCCTTTTCCACCTATGTCGGGCAGCAGCTCGACCTGGCCAAGTACGCCGAGGACCAGGAAGAACGC
AGCCAGGCCGAAGCCCTGGTGGCCCTGTTGACCCCGGTGGCCAAGGCCTTCTTCACCGATACCGGCCTGGAG
AGCTGCGTGCTCGGCCAGCAGGTGTTCGGCGGCCACGGCTACATCCGCGAATGGGGCCAGGAGCAACTGGTG
CGCGACGTACGCATCGCGCAGATCTACGAAGGCACCAACGGCATCCAGGCGCTCGACCTGATGGGCCGCAAG
GTGGTCGCCAACGGCGGGCTGTTCCTCTCCATCTTCAGCCGCGAGGTGCGAGCCTTCGCCGCCGGCGCCAAC
GCCGAACTGGCGGAGTTCGTCACCCCGCTGCTGACCGCCCTGGACCTGCTGGACAACCTCACCCAGGGCATC
GTCGCCCGCGCCGGCAACGACCCGCGCGAGATCGGCGCAGCCTCGGTGGAATACCTGCATCTGTTCGGCTAT
ACCGCCTACGCCTACCTCTGGGCGCGCATGGCCGCCGCCGCGCTGCGCCAGCGCGAGGCCGACCCGGCGTTC
CACGACGGCAAGCTGGCCACCGCGCGCTTCTACTTCGCCCGCATCCTGCCCCGCGTGCACTCCCTCGCCGCC
GCCGTCGAAGCCGGCAGCGAAAGCCTGTACGGCCTGGAGGCGGAACAGTTCTGA
Translation:
MPEYNAPLRDMRFLLNDVFDAPALWQRLPRLAERIDADTADAILEEAAKVTGGLLAPLNRSGDEEGAQWQDG
AVRTPAGFREAYATYAEGGWVGLTGNPAHGGMGMPKMLAVQFEEMMYAANASFSLYSTLSAGACLALDAHGS
EELKNRYLPNMYAGTWAGSMCLTEPHAGTDLGIIRTKAEPQADGSYRISGTKIFITGGEQDLTENIIHLVLA
KLPDAPAGSRGISLFLVPKFLVGDDGALGARNAVHCGSIEHKMGIKASATCVMNFDGASGWLVGEVNKGLAA
MFTMMNYERLSIGIQGIGCAEMSYQSAVAYARERLQSRAPTGPVARDKAADPIIVHPDVRRMLLTMKALTEG
GRAFSTYVGQQLDLAKYAEDQEERSQAEALVALLTPVAKAFFTDTGLESCVLGQQVFGGHGYIREWGQEQLV
RDVRIAQIYEGTNGIQALDLMGRKVVANGGLFLSIFSREVRAFAAGANAELAEFVTPLLTALDLLDNLTQGI
VARAGNDPREIGAASVEYLHLFGYTAYAYLWARMAAAALRQREADPAFHDGKLATARFYFARILPRVHSLAA
AVEAGSESLYGLEAEQF*
AnnotationID:515GeneID:506
AnnotatorUID: diggins
Modification Date/Time: 2005-06-07 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA4199
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153,cd00567,cd01158
Secondary Functional Category(ies):putative enzyme
EC Number:1.3.99.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66001.1|AE016229_2 (AE016775) acyl-CoA dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 592

 Score =  868 bits (2244), Expect = 0.0
 Identities = 434/593 (73%), Positives = 491/593 (82%), Gaps = 1/593 (0%)

>gb|AAO54049.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 592

 Score =  831 bits (2146), Expect = 0.0
 Identities = 408/593 (68%), Positives = 484/593 (81%), Gaps = 1/593 (0%)

>dbj|BAC02934.1| (AB077437) acyl-CoA dehydrogenase A [Acinetobacter sp. M-1]
          Length = 622

 Score =  655 bits (1690), Expect = 0.0
 Identities = 329/583 (56%), Positives = 427/583 (73%), Gaps = 4/583 (0%)






 
Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues, 100.0% aligned
Score =  440 bits (1133), Expect = 2e-124 

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). 
CD-Length = 369 residues,  92.4% aligned
Score =  189 bits (482), Expect = 7e-49

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  97.9% aligned
Score =  177 bits (451), Expect = 3e-45






   
Genomic Context:






   
Comment:


















    ReferenceID:1015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18157




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36875




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:506_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:506
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
890
                           PA4199_tr
                           translation of PA4199
                           593
                           99.66
                           99.66
                           0
                           3036.0
     

     
     
36648
                           gb|AAG07586.1|AE004836_5
                           (AE004836) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           593
                           99.66
                           99.66
                           0
                           3036.0
     

     
     
36651
                           gb|AAN69155.1|AE016549_4
                           (AE016787) acyl-CoA dehydrogenase family protein [Pseudomonas putida KT2440]
                           593
                           73.86
                           82.46
                           4
                           2229.0
     

     
     
891
                           PA0508_tr
                           translation of PA0508
                           594
                           73.56
                           84.34
                           3
                           2279.0
     

     
     
36649
                           gb|AAG03897.1|AE004488_1
                           (AE004488) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           594
                           73.56
                           84.34
                           3
                           2279.0
     

     






      

          
GC ORFID: 43508How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4199Glimmer Score: 

          
Start: 4125018Stop: 4126799

          
Length: 1782


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4199 translation of PA4199Homolog Bit Score 1174.0

          
Other Homologs:  t_PA0508 (ORF: BLASTX 881.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 842.0), t_PA0507 (ORF: BLASTX 664.0), t_PA5187 (ORF: BLASTX 614.0), t_PA0506 (ORF: BLASTX 608.0), t_PA1284 (ORF: BLASTX 553.0), t_PA5020 (ORF: BLASTX 388.0), t_PA4199 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGAATACAACGCCCCGCTGCGCGACATGCGCTTCCTGCTCAACGACGTGTTCGACGCCCCCGCCCTG 
TGGCAGCGCCTGCCGCGACTGGCCGAGCGGATCGACGCCGACACCGCCGACGCCATCCTCGAGGAAGCGGCC 
AAGGTCACCGGCGGCCTGCTCGCGCCGCTCAACCGCAGTGGCGACGAAGAAGGCGCGCAGTGGCAGGACGGC 
GCCGTGCGCACCCCGGCCGGCTTCCGCGAGGCCTACGCGACCTACGCCGAGGGCGGCTGGGTCGGCCTCACC 
GGCAATCCGGCCCATGGCGGCATGGGCATGCCGAAGATGCTGGCAGTGCAGTTCGAGGAGATGATGTACGCG 
GCCAACGCCAGCTTCAGCCTCTACTCGACCCTTTCCGCCGGCGCCTGCCTGGCCCTCGATGCGCACGGCAGC 
GAGGAGCTGAAGAACAGGTACCTGCCGAACATGTACGCCGGCACCTGGGCCGGCTCCATGTGTCTGACCGAA 
CCGCATGCCGGCACCGACCTGGGCATCATCCGCACCAAGGCCGAGCCGCAGGCCGACGGTTCCTACAGGATC 
AGCGGGACGAAGATCTTCATCACCGGCGGCGAACAGGACCTCACCGAGAACATCATTCACCTGGTGCTGGCC 
AAGCTGCCCGACGCGCCGGCCGGTTCGCGCGGCATCTCGCTGTTCCTGGTGCCGAAGTTCCTGGTCGGCGAC 
GACGGCGCGCTCGGCGCACGCAACGCGGTGCACTGCGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCG 
GCCACCTGCGTGATGAACTTCGACGGCGCCAGTGGCTGGCTGGTCGGCGAAGTCAACAAGGGCCTGGCGGCG 
ATGTTCACCATGATGAACTACGAGCGCCTGTCCATCGGCATCCAGGGCATCGGCTGCGCCGAGATGTCCTAC 
CAGAGCGCCGTCGCCTACGCCCGCGAGCGCCTGCAAAGCCGCGCGCCGACCGGCCCGGTGGCCAGGGACAAG 
GCCGCCGACCCGATCATCGTGCACCCCGACGTGCGCCGCATGCTGCTCACCATGAAGGCGCTGACCGAGGGC 
GGCCGCGCCTTTTCCACCTATGTCGGGCAGCAGCTCGACCTGGCCAAGTACGCCGAGGACCAGGAAGAACGC 
AGCCAGGCCGAAGCCCTGGTGGCCCTGTTGACCCCGGTGGCCAAGGCCTTCTTCACCGATACCGGCCTGGAG 
AGCTGCGTGCTCGGCCAGCAGGTGTTCGGCGGCCACGGCTACATCCGCGAATGGGGCCAGGAGCAACTGGTG 
CGCGACGTACGCATCGCGCAGATCTACGAAGGCACCAACGGCATCCAGGCGCTCGACCTGATGGGCCGCAAG 
GTGGTCGCCAACGGCGGGCTGTTCCTCTCCATCTTCAGCCGCGAGGTGCGAGCCTTCGCCGCCGGCGCCAAC 
GCCGAACTGGCGGAGTTCGTCACCCCGCTGCTGACCGCCCTGGACCTGCTGGACAACCTCACCCAGGGCATC 
GTCGCCCGCGCCGGCAACGACCCGCGCGAGATCGGCGCAGCCTCGGTGGAATACCTGCATCTGTTCGGCTAT 
ACCGCCTACGCCTACCTCTGGGCGCGCATGGCCGCCGCCGCGCTGCGCCAGCGCGAGGCCGACCCGGCGTTC 
CACGACGGCAAGCTGGCCACCGCGCGCTTCTACTTCGCCCGCATCCTGCCCCGCGTGCACTCCCTCGCCGCC 
GCCGTCGAAGCCGGCAGCGAAAGCCTGTACGGCCTGGAGGCGGAACAGTTCTGA