ViewGene
Locus Name:
GeneID:
Location:

GeneID:5059
TrivialName: PA14_39620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39620
PAO1 Ortholog Locus:PA1925
Sequence Length:327
Protein Length:108
Start: 3528562
Stop: 3528236
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05313.1|AE004618_7 (AE004618) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/108 (100%), Positives = 108/108 (100%)
Sequence:
ATGCGCTTCCTCGAACACGACGAGGCGGACGACCCGATCCTCTCGATGGTCAACCTGATCGACCTGTTCCTG
GTGGTGATCGGCATCCTCCTGATCGTCATCGTGCAGAACCCGCTCAACCCGTTCAGCCAGGACAAGGTGGTG
GTGGTCGAGAATCCCGGCGAGGCGGACATGCGCATGCTGGTCAAGGACGGCAAGGAGCTGAAGCGCTACCAG
GCCAGCGGCGAGATCGGCGAAGGGCAGGGCAGCCGCGCCGGGGTGACCTACCGCTTGGCCGACGGACGGATG
ATCTACGTGCCGGAGAGCGGCGGGGAGGCCGGCAAGTAG
Translation:
MRFLEHDEADDPILSMVNLIDLFLVVIGILLIVIVQNPLNPFSQDKVVVVENPGEADMRMLVKDGKELKRYQ
ASGEIGEGQGSRAGVTYRLADGRMIYVPESGGEAGK*
AnnotationID:5064GeneID:5059
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1925
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10118




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27260




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32758




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5059_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5059
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7466
                           PA1925_tr
                           translation of PA1925
                           108
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192798
                           gb|AAG05313.1|AE004618_7
                           (AE004618) hypothetical protein PA1925 [Pseudomonas aeruginosa PAO1]
                           108
                           99.99
                           99.99
                           0
                           544.0
     

     
     
192799
                           emb|CAE27842.1|
                           (BX572600) conserved unknown protein [Rhodopseudomonas palustris CGA009]
                           111
                           61.26
                           77.47
                           3
                           362.0
     

     
     
192801
                           emb|CAD84543.1|
                           (BX321858) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           118
                           50.00
                           71.18
                           10
                           317.0
     

     
     
192800
                           emb|CAD84666.1|
                           (BX321858) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           114
                           47.36
                           71.92
                           10
                           320.0
     

     






      

          
GC ORFID: 48061How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1925Glimmer Score: 

          
Start: 1425349Stop: 1425675

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1925 translation of PA1925Homolog Bit Score 214.0

          
Other Homologs:  t_PA1925 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTTCCTCGAACACGACGAGGCGGACGACCCGATCCTCTCGATGGTCAACCTGATCGACCTGTTCCTG 
GTGGTGATCGGCATCCTCCTGATCGTCATCGTGCAGAACCCGCTCAACCCGTTCAGCCAGGACAAGGTGGTG 
GTGGTCGAGAATCCCGGCGAGGCGGACATGCGCATGCTGGTCAAGGACGGCAAGGAGCTGAAGCGCTACCAG 
GCCAGCGGCGAGATCGGCGAAGGGCAGGGCAGCCGCGCCGGGGTGACCTACCGCTTGGCCGACGGACGGATG 
ATCTACGTGCCGGAGAGCGGCGGGGAGGCCGGCAAGTAG