ViewGene
Locus Name:
GeneID:
Location:

GeneID:5058
TrivialName: PA14_52110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52110
PAO1 Ortholog Locus:PA0939
Sequence Length:327
Protein Length:108
Start: 4621406
Stop: 4621732
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04328.1|AE004528_6 (AE004528) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/108 (99%), Positives = 107/108 (99%)
Sequence:
ATGGACAGCTACCACCCGATCGCCTGCGATCTCCATGACTACCTGGAGATCGCCTGCCTCTACCGCTACCGG
TTGCTCCTCGAACTCGAGGATGGTGTTCGCTTCGAAGCCGAGGCGCGCACGACGCATACCCGGGCCGTTCGG
CCAGGCGGCGGCAAGGAGGAATACCTTGAGGTGGCCGTCGAAGGAGCGACTCTGCTGCTGCGCCTGGATCGC
CTGTTGGCGATTACCGCCCTCACGGAAGCGGCCTTGTTCGGCCGCATACGCCTGAGGGAAGAGGCCTGTTCC
AGAGCATCCGGCATGCCATCTTCACACCTTGGAAACTGA
Translation:
MDSYHPIACDLHDYLEIACLYRYRLLLELEDGVRFEAEARTTHTRAVRPGGGKEEYLEVAVEGATLLLRLDR
LLAITALTEAALFGRIRLREEACSRASGMPSSHLGN*
AnnotationID:5063GeneID:5058
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 12:12:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0939
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07073, COG4568
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam07073, ROF, Modulator of Rho-dependent transcription termination. Score: 101, 1e-23
COG4568, Rof, Transcriptional antiterminator. Score: 98.9, 8e-23






   
Genomic Context:






   
Comment:


















    ReferenceID:10116




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27258




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5058
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7465
                           PA0939_tr
                           translation of PA0939
                           108
                           99.07
                           99.07
                           0
                           544.0
     

     
     
192797
                           gb|AAG04328.1|AE004528_6
                           (AE004528) hypothetical protein PA0939 [Pseudomonas aeruginosa PAO1]
                           108
                           99.07
                           99.07
                           0
                           544.0
     

     






      

          
GC ORFID: 48060How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0939Glimmer Score: 

          
Start: 332501Stop: 332175

          
Length: 327


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0939 translation of PA0939Homolog Bit Score 214.0

          
Other Homologs:  t_PA0939 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGCTACCACCCGATCGCCTGCGATCTCCATGACTACCTGGAGATCGCCTGCCTCTACCGCTACCGG 
TTGCTCCTCGAACTCGAGGATGGTGTTCGCTTCGAAGCCGAGGCGCGCACGACGCATACCCGGGCCGTTCGG 
CCAGGCGGCGGCAAGGAGGAATACCTTGAGGTGGCCGTCGAAGGAGCGACTCTGCTGCTGCGCCTGGATCGC 
CTGTTGGCGATTACCGCCCTCACGGAAGCGGCCTTGTTCGGCCGCATACGCCTGAGGGAAGAGGCCTGTTCC 
AGAGCATCCGGCATGCCATCTTCACACCTTGGAAACTGA