ViewGene
Locus Name:
GeneID:
Location:

GeneID:5057
TrivialName: PA14_52730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52730
PAO1 Ortholog Locus:PA0894
Sequence Length:324
Protein Length:107
Start: 4673848
Stop: 4674171
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04283.1|AE004523_11 (AE004523) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/107 (97%), Positives = 105/107 (98%)
Sequence:
ATGCACTCGGGTGCATACTTCTTCTACGCCGCCACGCGGGCGGGAACAGCAGGGAAACAAGCCATGCCCATC
GAGGGAATCGACTACCGTCTCGTCTTCGCCTCCGACGTCAATCCGCGCGACGGCCTCGGCCTGGAGTGCTGG
CGCGGCGAACAGCCGCTGTTCGAGGTATTTCGCGACGACGCCGGCCGGCGTTTCGTGGTCAACCTGTTCGCC
AGCGACGTTCCGCTGGAACTGCTGAAGGCGATCATTCCGACGGCCCGTCGCGAACTCGGCGACTTCCCGAGG
CGATCCGCCTCCCGGGGCGTCGCAAAGCCCGGCTGA
Translation:
MHSGAYFFYAATRAGTAGKQAMPIEGIDYRLVFASDVNPRDGLGLECWRGEQPLFEVFRDDAGRRFVVNLFA
SDVPLELLKAIIPTARRELGDFPRRSASRGVAKPG*
AnnotationID:5062GeneID:5057
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0894
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10114




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27256




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5057
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7464
                           PA0894_tr
                           translation of PA0894
                           107
                           97.19
                           98.13
                           0
                           544.0
     

     
     
192796
                           gb|AAG04283.1|AE004523_11
                           (AE004523) hypothetical protein PA0894 [Pseudomonas aeruginosa PAO1]
                           107
                           97.19
                           98.13
                           0
                           544.0
     

     






      

          
GC ORFID: 48059How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0894Glimmer Score: 

          
Start: 280059Stop: 279736

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0894 translation of PA0894Homolog Bit Score 214.0

          
Other Homologs:  t_PA0894 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACTCGGGTGCATACTTCTTCTACGCCGCCACGCGGGCGGGAACAGCAGGGAAACAAGCCATGCCCATC 
GAGGGAATCGACTACCGTCTCGTCTTCGCCTCCGACGTCAATCCGCGCGACGGCCTCGGCCTGGAGTGCTGG 
CGCGGCGAACAGCCGCTGTTCGAGGTATTTCGCGACGACGCCGGCCGGCGTTTCGTGGTCAACCTGTTCGCC 
AGCGACGTTCCGCTGGAACTGCTGAAGGCGATCATTCCGACGGCCCGTCGCGAACTCGGCGACTTCCCGAGG 
CGATCCGCCTCCCGGGGCGTCGCAAAGCCCGGCTGA