ViewGene
Locus Name:
GeneID:
Location:

GeneID:5056
TrivialName: PA14_71360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71360
PAO1 Ortholog Locus:PA5406
Sequence Length:333
Protein Length:110
Start: 6356668
Stop: 6357000
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08791.1|AE004953_5 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/110 (100%), Positives = 110/110 (100%)
Sequence:
GTGAAGCCGGGTGCCGAAGCCTGGCAACCGACCACGGACCTGGCTTCGGCAGGCGCTTTTCTTTATCCTGCG
CGCCCTTTGAACGACTGGGACGAGATCATGCTGGAGAACACCCTGGAACGCCTGGAAACCCTGGTAGCCGAG
CTACTGCAACAGAACCAGGCCCTGCGCGACAGCCACGACCAGCTTCAGCAGCAGCTGCGCCAGGCCACCGAG
GAAAACGAAACCCTGCAACTCTCCATGCTCGAGCAGGAAGAAAAGCAGAGCGGCACCCAGGCCCGCCTGGAA
GCCCTGGTCGAGCGCCTCAGCGCGCAGCAACCGGTTAGCGCATGA
Translation:
MKPGAEAWQPTTDLASAGAFLYPARPLNDWDEIMLENTLERLETLVAELLQQNQALRDSHDQLQQQLRQATE
ENETLQLSMLEQEEKQSGTQARLEALVERLSAQQPVSA*
AnnotationID:5061GeneID:5056
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5406
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15244




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27254




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5056
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7463
                           PA5406_tr
                           translation of PA5406
                           110
                           99.99
                           99.99
                           0
                           548.0
     

     
     
192795
                           gb|AAG08791.1|AE004953_5
                           (AE004953) hypothetical protein PA5406 [Pseudomonas aeruginosa PAO1]
                           110
                           99.09
                           99.99
                           0
                           545.0
     

     






      

          
GC ORFID: 48058How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5406Glimmer Score: 

          
Start: 5620357Stop: 5620689

          
Length: 333


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5406 translation of PA5406Homolog Bit Score 215.0

          
Other Homologs:  t_PA5406 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGCCGGGTGCCGAAGCCTGGCAACCGACCACGGACCTGGCTTCGGCAGGCGCTTTTCTTTATCCTGCG 
CGCCCTTTGAACGACTGGGACGAGATCATGCTGGAGAACACCCTGGAACGCCTGGAAACCCTGGTAGCCGAG 
CTACTGCAACAGAACCAGGCCCTGCGCGACAGCCACGACCAGCTTCAGCAGCAGCTGCGCCAGGCCACCGAG 
GAAAACGAAACCCTGCAACTCTCCATGCTCGAGCAGGAAGAAAAGCAGAGCGGCACCCAGGCCCGCCTGGAA 
GCCCTGGTCGAGCGCCTCAGCGCGCAGCAACCGGTTAGCGCATGA