ViewGene
Locus Name:
GeneID:
Location:

GeneID:5055
TrivialName: PA14_36330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36330
PAO1 Ortholog Locus:PA2193
Sequence Length:315
Protein Length:104
Start: 3236380
Stop: 3236066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05581.1|AE004646_2 (AE004646) hydrogen cyanide synthase HcnA [Pseudomonas aeruginosa PAO1]
Identities = 103/104 (99%), Positives = 104/104 (100%)
Sequence:
ATGCACCTTCTTGAACGTCAACACGATATCCAGCCCCTCTCGCGGGCAGACATGACCATCCACCTCAATGGC
CAGCCCGTCGCGGCGGCTGCCGGTGAGACCGTGCTCAACGTGCTCAATGCCGTGGGCCTGCGCCGGCTCGCG
CGCAACGACCATGGCCAGGCCAGCGGCGCCTTCTGCGGCATGGGCGTATGCCACTGCTGCCTGGTCGCCATT
GACGGCCGGCCCAAGCGCCGCGCCTGCCAGACCGTCGTCCGGCCGGGCATGCGGGTGGAAACCGAAAGCAAC
CGCTTCGACCGGGAGGAACGGCCATGA
Translation:
MHLLERQHDIQPLSRADMTIHLNGQPVAAAAGETVLNVLNAVGLRRLARNDHGQASGAFCGMGVCHCCLVAI
DGRPKRRACQTVVRPGMRVETESNRFDREERP*
AnnotationID:5060GeneID:5055
AnnotatorUID: diggins
Modification Date/Time: 2006-01-17 21:09:42
Gene Name:hcnA
Confidence Code:1
GeneProduct:hydrogen cyanide synthase HcnA
Cell Localization:()
Synonyms:PA2193
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC38594.1| (AF053760) hydrogen cyanide synthase HcnA [Pseudomonas fluorescens]
          Length = 105

 Score =  151 bits (382), Expect = 6e-37
 Identities = 71/102 (69%), Positives = 82/102 (80%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10110




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27251




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38241




  
Author/Investigator(s):
        Pessi G, Haas D.





  
Title:
        Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa.




  
PubMed:
        11092854


MedLine:
        




    
Source:
J Bacteriol. 2000 Dec;182(24):6940-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=11092854

















    ReferenceID:38242




  
Author/Investigator(s):
        Laville J, Blumer C, Von Schroetter C, Gaia V, Defago G, Keel C, Haas D.





  
Title:
        Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0.




  
PubMed:
        9620970


MedLine:
        




    
Source:
J Bacteriol. 1998 Jun;180(12):3187-96.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=9620970









           
Homologs By Global Alignment 

           

       



     
Gene ID:5055
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7462
                           PA2193_tr
                           translation of PA2193
                           104
                           99.03
                           99.99
                           0
                           547.0
     

     
     
192792
                           gb|AAG05581.1|AE004646_2
                           (AE004646) hydrogen cyanide synthase HcnA [Pseudomonas aeruginosa PAO1]
                           104
                           99.03
                           99.99
                           0
                           547.0
     

     
     
192793
                           gb|AAF21028.1|AF208523_1
                           (AF208523) hydrogen cyanide synthase HcnA [Pseudomonas aeruginosa]
                           104
                           99.03
                           99.99
                           0
                           547.0
     

     
     
192794
                           gb|AAC38594.1|
                           (AF053760) hydrogen cyanide synthase HcnA [Pseudomonas fluorescens]
                           105
                           67.61
                           78.09
                           1
                           379.0
     

     






      

          
GC ORFID: 48057How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2193Glimmer Score: 

          
Start: 1717536Stop: 1717850

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2193 translation of PA2193Homolog Bit Score 215.0

          
Other Homologs:  t_PA2193 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCTTCTTGAACGTCAACACGATATCCAGCCCCTCTCGCGGGCAGACATGACCATCCACCTCAATGGC 
CAGCCCGTCGCGGCGGCTGCCGGTGAGACCGTGCTCAACGTGCTCAATGCCGTGGGCCTGCGCCGGCTCGCG 
CGCAACGACCATGGCCAGGCCAGCGGCGCCTTCTGCGGCATGGGCGTATGCCACTGCTGCCTGGTCGCCATT 
GACGGCCGGCCCAAGCGCCGCGCCTGCCAGACCGTCGTCCGGCCGGGCATGCGGGTGGAAACCGAAAGCAAC 
CGCTTCGACCGGGAGGAACGGCCATGA