ViewGene

Locus Name:
GeneID:
Location:

GeneID:5054
TrivialName: PA14_48990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48990
PAO1 Ortholog Locus:PA0718
Sequence Length:291
Protein Length:96
Start: 4352725
Stop: 4352435
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04107.1|AE004507_6 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 93/96 (96%), Positives = 93/96 (96%)
Sequence:
ATGGCCGCCAGTCCCTACTACCTGCACCAAACCCACGCCCCGGACTGCGCCTGCTCTGTGTGCTGGTCCGCA
AGGCAGGCCATCCCATTGCACAGCCCGTCGCCGTGTCCGGACTGCCGGCCCCCTGGGCTGCCCTATCTGGAA
GATGGCCGCTGGCTCTGCCGTCCCCGTTCCTTCTGCGCGAAACACGACCCGTCCCGGCGTCCGCCGAAGTAC
TGGCACGTTGTGTACGACAGCGGGAAACCCACGCCCTTCGTGCCCGTGCGCGAAGCATTCCAACTGGAGGGC
TGA
Translation:
MAASPYYLHQTHAPDCACSVCWSARQAIPLHSPSPCPDCRPPGLPYLEDGRWLCRPRSFCAKHDPSRRPPKY
WHVVYDSGKPTPFVPVREAFQLEG*
AnnotationID:5059GeneID:5054
AnnotatorUID: danlee
Modification Date/Time: 2006-04-12 17:05:36
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0718
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gb|AAG04107.1|AE004507_6 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]  
Length = 96

 Score =  215 bits (548), Expect = 4e-56
 Identities = 93/96 (96%), Positives = 93/96 (96%)


Structural Features:
Genomic Context:
Cluster of genes from Pf1
Comment:
ReferenceID:10108
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27249
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5054

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7461 PA0718_tr translation of PA0718 96 96.87 96.87 0 548.0
192791 gb|AAG04107.1|AE004507_6 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1] 96 96.87 96.87 0 548.0
GC ORFID: 48056How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0718Glimmer Score:
Start: 601183Stop: 601473
Length: 291
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0718 translation of PA0718Homolog Bit Score 215.0
Other Homologs:
GC ORF Sequence
ATGGCCGCCAGTCCCTACTACCTGCACCAAACCCACGCCCCGGACTGCGCCTGCTCTGTGTGCTGGTCCGCA
AGGCAGGCCATCCCATTGCACAGCCCGTCGCCGTGTCCGGACTGCCGGCCCCCTGGGCTGCCCTATCTGGAA
GATGGCCGCTGGCTCTGCCGTCCCCGTTCCTTCTGCGCGAAACACGACCCGTCCCGGCGTCCGCCGAAGTAC
TGGCACGTTGTGTACGACAGCGGGAAACCCACGCCCTTCGTGCCCGTGCGCGAAGCATTCCAACTGGAGGGC
TGA