ViewGene
Locus Name:
GeneID:
Location:

GeneID:5053
TrivialName: PA14_52330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52330
PAO1 Ortholog Locus:PA0922
Sequence Length:315
Protein Length:104
Start: 4644009
Stop: 4644323
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04311.1|AE004526_6 (AE004526) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 104/104 (100%), Positives = 104/104 (100%)
Sequence:
ATGCTGAACGTCGAACAATTGAAGCGCAGCGTGAACCGGATGGAACTCGACGACATCCGCCAGGCAGTGGAC
GAACTGCAGATGGACGGCCTGGTCACCGACGGCAAGACGCCGTTCACCCGCGTGCACTTCAACACCTGCTTC
GCCGAGATCGAGGCGCTGTTCCAGCGCGCCGGCTTCCACCGGCCGCTCGATGTGGTCGGCTACCAGGGCGAG
ATCTATGCGTTGTACGACCCCTCTCGCTGGGAGGCCGTGGAAGTGCTGCGCTGGTTGAAGGAATACCGCGAG
GAATCGCGTCACCTGACTCCGGCGTGA
Translation:
MLNVEQLKRSVNRMELDDIRQAVDELQMDGLVTDGKTPFTRVHFNTCFAEIEALFQRAGFHRPLDVVGYQGE
IYALYDPSRWEAVEVLRWLKEYREESRHLTPA*
AnnotationID:5058GeneID:5053
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0922
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10106




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27247




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5053
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7460
                           PA0922_tr
                           translation of PA0922
                           104
                           99.99
                           99.99
                           0
                           548.0
     

     
     
192789
                           gb|AAG04311.1|AE004526_6
                           (AE004526) hypothetical protein PA0922 [Pseudomonas aeruginosa PAO1]
                           104
                           99.99
                           99.99
                           0
                           548.0
     

     
     
192790
                           gb|AAN67723.1|AE016403_8
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           104
                           67.30
                           76.92
                           2
                           357.0
     

     






      

          
GC ORFID: 48055How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0922Glimmer Score: 

          
Start: 309898Stop: 309584

          
Length: 315


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0922 translation of PA0922Homolog Bit Score 215.0

          
Other Homologs:  t_PA0922 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACGTCGAACAATTGAAGCGCAGCGTGAACCGGATGGAACTCGACGACATCCGCCAGGCAGTGGAC 
GAACTGCAGATGGACGGCCTGGTCACCGACGGCAAGACGCCGTTCACCCGCGTGCACTTCAACACCTGCTTC 
GCCGAGATCGAGGCGCTGTTCCAGCGCGCCGGCTTCCACCGGCCGCTCGATGTGGTCGGCTACCAGGGCGAG 
ATCTATGCGTTGTACGACCCCTCTCGCTGGGAGGCCGTGGAAGTGCTGCGCTGGTTGAAGGAATACCGCGAG 
GAATCGCGTCACCTGACTCCGGCGTGA