ViewGene
Locus Name:
GeneID:
Location:

GeneID:5052
TrivialName: PA14_28730
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28730
PAO1 Ortholog Locus:PA2737
Sequence Length:357
Protein Length:118
Start: 2474142
Stop: 2474498
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68084.1|AE016440_4 (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 108/118 (91%), Positives = 113/118 (95%)
Sequence:
ATGCTGGAACCAAGTCATAACGACGAGCTGCCACCGATTCCCGGCAAGCGCTACTTCACCATCGGCGAAGTC
AGCGACTTGTGCGCGGTCAAGCCCCACGTGCTGCGCTACTGGGAGCAGGAATTCCCGCAGCTCAACCCGGTG
AAGCGCCGCGGAAACCGCCGCTATTATCAGCGCCAGGACGTGCTGATGATCCGCCAGATCCGCGCGCTCCTC
TACGACCAGGGCTTCACCATCGGCGGGGCGCGCCAGCGCCTCTCCGGCGACGAGGCCAAGGACGACGTCACC
CAGTACAAGCAGCTCATCCGCCAGATGATCGCCGAGCTGGAGGAAGTCCTGCTGGTCCTGAAGAAGTGA
Translation:
MLEPSHNDELPPIPGKRYFTIGEVSDLCAVKPHVLRYWEQEFPQLNPVKRRGNRRYYQRQDVLMIRQIRALL
YDQGFTIGGARQRLSGDEAKDDVTQYKQLIRQMIAELEEVLLVLKK*
AnnotationID:5057GeneID:5052
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 14:02:47
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2737
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01280
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48731798|ref|ZP_00265542.1|  COG0789: Predicted transcriptional regulators [Pseudomonas fluorescens PfO-1]
     Length=118
     Score =  229 bits (583),  Expect = 3e-59
     Identities = 111/118 (94%), Positives = 115/118 (97%), Gaps = 0/118 (0%)

gi|68343787|gb|AAY91393.1|  transcriptional regulator, MerR family [Pseudomonas fluorescens Pf-5]
     Length=118
     Score =  228 bits (582),  Expect = 3e-59
     Identities = 111/118 (94%), Positives = 115/118 (97%), Gaps = 0/118 (0%)

gi|24984035|gb|AAN68084.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
     Length=118
     Score =  222 bits (566),  Expect = 2e-57
     Identities = 108/118 (91%), Positives = 113/118 (95%), Gaps = 0/118 (0%)

gi|11347933|pir||G83302  conserved hypothetical protein PA2737 [Pseudomonas aeruginosa PAO1]
     Length=85
     Score =  169 bits (429),  Expect = 2e-41
     Identities = 84/85 (98%), Positives = 85/85 (100%), Gaps = 0/85 (0%)






 
Structural Features:
cd01280, HTH_MERR_1, Helix-turn-helix MERR transcription regulator, subgroup 1.
             CD-Length = 101 residues, only  79.2% aligned
             Score =  122 bits (307), Expect = 1e-29






   
Genomic Context:






   
Comment:
This gene corresponds to PAO1 PA2737 with an additional 33 amino acids at the 5' end.  The PAO1 sequence 
does have an open reading frame (start: 3099473, stop: 3099829) that would convert PA2737 from its current
85 aa to 118 aa.


















    ReferenceID:10104




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36262




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5052_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5052
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
192775
                           gb|AAN68084.1|AE016440_4
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           118
                           91.52
                           95.76
                           0
                           566.0
     

     
     
192776
                           gb|AAO55896.1|
                           (AE016864) transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           118
                           86.44
                           92.37
                           0
                           542.0
     

     
     
7459
                           PA2737_tr
                           translation of PA2737
                           118
                           72.03
                           72.03
                           33
                           432.0
     

     
     
192777
                           gb|AAM41732.1|
                           (AE012357) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           118
                           71.18
                           81.35
                           0
                           445.0
     

     
     
192779
                           gb|AAG06125.1|AE004702_2
                           (AE004702) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           118
                           71.18
                           72.03
                           33
                           429.0
     

     






      

          
GC ORFID: 48054How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene1170Glimmer Score: 

          
Start: 2479784Stop: 2479428

          
Length: 357


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene1170 related to: gi|15837346|ref|NP_298034.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa 9a5c] pir||E82767 conserved hypothetical protein XF0744 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF835Homolog Bit Score 216.0

          
Other Homologs:  t_PA2737 (ORF: BLASTX 171.0), psyr_15may02_Scaffold1_revised_gene1170 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGAACCAAGTCATAACGACGAGCTGCCACCGATTCCCGGCAAGCGCTACTTCACCATCGGCGAAGTC 
AGCGACTTGTGCGCGGTCAAGCCCCACGTGCTGCGCTACTGGGAGCAGGAATTCCCGCAGCTCAACCCGGTG 
AAGCGCCGCGGAAACCGCCGCTATTATCAGCGCCAGGACGTGCTGATGATCCGCCAGATCCGCGCGCTCCTC 
TACGACCAGGGCTTCACCATCGGCGGGGCGCGCCAGCGCCTCTCCGGCGACGAGGCCAAGGACGACGTCACC 
CAGTACAAGCAGCTCATCCGCCAGATGATCGCCGAGCTGGAGGAAGTCCTGCTGGTCCTGAAGAAGTGA