ViewGene
Locus Name:
GeneID:
Location:

GeneID:5051
TrivialName: PA14_04300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04300
PAO1 Ortholog Locus:PA0329
Sequence Length:333
Protein Length:110
Start: 385207
Stop: 384875
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03718.1|AE004471_1 (AE004471) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/110 (99%), Positives = 109/110 (99%)
Sequence:
ATGGCAGCCAAATTCCATCTGAAGAAAGCGAAAGACGGCCAGTTCCACTTCAACCTGCATGCCGCCAACGGC
GAGATCATTCTCACCAGCGAACTGTACAAGGCCAAGGACTCGGCGCTCGGCGGCATCGAGTCGGTGCGCAAG
AACTCCCAGCGCGACGGTGCCTTCGAGGTCAAGCCGGCCAACAACGGCAAGTTCCACTTCGTGCTCAAGGCC
ACCAATGGCCAGGTCGTCGGCCAGAGCCAGCTCTATGCCAGCCAGGCCAACGCCGAAGCCGGCGTGCAGTCG
GTGAAGCGCGCAGCGCCGGAAGCCGGCCTCAGCGACGAAAGCTGA
Translation:
MAAKFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKNSQRDGAFEVKPANNGKFHFVLKA
TNGQVVGQSQLYASQANAEAGVQSVKRAAPEAGLSDES*
AnnotationID:5056GeneID:5051
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0329
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10102




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33657




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5051_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5051
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7458
                           PA0329_tr
                           translation of PA0329
                           110
                           99.09
                           99.09
                           0
                           549.0
     

     
     
192767
                           gb|AAG03718.1|AE004471_1
                           (AE004471) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           110
                           99.09
                           99.09
                           0
                           549.0
     

     
     
192774
                           gb|AAK02603.1|
                           (AE006087) unknown [Pasteurella multocida]
                           114
                           47.36
                           64.91
                           4
                           244.0
     

     
     
192768
                           gb|AAC75141.1|
                           (AE000298) orf, hypothetical protein [Escherichia coli K12]
                           123
                           44.71
                           56.91
                           13
                           261.0
     

     
     
192769
                           gb|AAP17505.1|
                           (AE016985) hypothetical protein S2270 [Shigella flexneri 2a str. 2457T]
                           123
                           44.71
                           56.91
                           13
                           260.0
     

     






      

          
GC ORFID: 48053How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0329Glimmer Score: 

          
Start: 6186549Stop: 6186217

          
Length: 333


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0329 translation of PA0329Homolog Bit Score 216.0

          
Other Homologs:  t_PA0329 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGCCAAATTCCATCTGAAGAAAGCGAAAGACGGCCAGTTCCACTTCAACCTGCATGCCGCCAACGGC 
GAGATCATTCTCACCAGCGAACTGTACAAGGCCAAGGACTCGGCGCTCGGCGGCATCGAGTCGGTGCGCAAG 
AACTCCCAGCGCGACGGTGCCTTCGAGGTCAAGCCGGCCAACAACGGCAAGTTCCACTTCGTGCTCAAGGCC 
ACCAATGGCCAGGTCGTCGGCCAGAGCCAGCTCTATGCCAGCCAGGCCAACGCCGAAGCCGGCGTGCAGTCG 
GTGAAGCGCGCAGCGCCGGAAGCCGGCCTCAGCGACGAAAGCTGA