ViewGene
Locus Name:
GeneID:
Location:

GeneID:5050
TrivialName: PA14_70050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70050
PAO1 Ortholog Locus:PA5305
Sequence Length:345
Protein Length:114
Start: 6247426
Stop: 6247082
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08690.1|AE004943_6 (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/114 (99%), Positives = 114/114 (100%)
Sequence:
ATGACAACCCGTAGCAAACTCGGTATCGCCCTGCTGGCCCTCGGCATCAGCCTTTCCGCCATGGCGATGGAC
CTCGGCCAGGCCATGTCGGCCCTTGGCGGCGCCAAGGCCCAGGGCCTGGTCGGCGAGCAGGCGGACGGTTAC
CTTGGCGTGGTCAGCAACAGCGGCCAGGCGGCGGACATCGCCGCGCAGATCAATGCCGCGCGCCGCGCCGAA
TACCAGAAGGTGGCCAACAGCAGCGGCGCTTCGCTGGCCGACGTGGAGGCCATGGCCGGCAAGAAGGCGATG
GAGAAAACCCCTGCCGGGCAGTACGTCCAGGTCGGCGGCAAGTGGGTGAAGAAATAG
Translation:
MTTRSKLGIALLALGISLSAMAMDLGQAMSALGGAKAQGLVGEQADGYLGVVSNSGQAADIAAQINAARRAE
YQKVANSSGASLADVEAMAGKKAMEKTPAGQYVQVGGKWVKK*
AnnotationID:5055GeneID:5050
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5305
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20562.1| (AE008772) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 107

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

>gb|AAO69180.1| (AE016839) putative secreted protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 107

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10100




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34750




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5050_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5050
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7457
                           PA5305_tr
                           translation of PA5305
                           114
                           99.12
                           99.99
                           0
                           549.0
     

     
     
192766
                           gb|AAG08690.1|AE004943_6
                           (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           114
                           99.12
                           99.99
                           0
                           549.0
     

     






      

          
GC ORFID: 48052How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5305Glimmer Score: 

          
Start: 5511115Stop: 5510771

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5305 translation of PA5305Homolog Bit Score 216.0

          
Other Homologs:  t_PA5305 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAACCCGTAGCAAACTCGGTATCGCCCTGCTGGCCCTCGGCATCAGCCTTTCCGCCATGGCGATGGAC 
CTCGGCCAGGCCATGTCGGCCCTTGGCGGCGCCAAGGCCCAGGGCCTGGTCGGCGAGCAGGCGGACGGTTAC 
CTTGGCGTGGTCAGCAACAGCGGCCAGGCGGCGGACATCGCCGCGCAGATCAATGCCGCGCGCCGCGCCGAA 
TACCAGAAGGTGGCCAACAGCAGCGGCGCTTCGCTGGCCGACGTGGAGGCCATGGCCGGCAAGAAGGCGATG 
GAGAAAACCCCTGCCGGGCAGTACGTCCAGGTCGGCGGCAAGTGGGTGAAGAAATAG