ViewGene

Locus Name:
GeneID:
Location:

GeneID:505
TrivialName: PA14_11900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11900
PAO1 Ortholog Locus:PA4016
Sequence Length:1740
Protein Length:579
Start: 1031123
Stop: 1029384
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07403.1|AE004818_9 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 578/579 (99%), Positives = 579/579 (100%)
Sequence:
ATGCTTCGCCCCGCCAGGTCTCTCTCGCTCTGCTCCGCCCTGGTCATCCTGCTCGCCGCCTGTGGCGAGGGC
GAACCGCTGCTCCCGGCCGATGCGCGCCTGCCGGACGGCGCGCGCTATCGCGGCGAGCTGGTGGACGGGCGC
CTGGAAGGCCAGGGCCGGCTGGACTACGACAACGGCGCCTGGTACGCCGGCCGCTTCGAGCATGGCCTGCTG
CACGGCCATGGCACCTGGCAGGGCGCCGACGGCAGCCGCTACAGCGGTGGCTTCGCGGCCGGCCTGTTCGAC
GGCCAGGGACGCCTGGCGATGGCCGATGGCAGCGTCTACCAGGGCGGCTTCCGCCAGGGCCTGTTCGATGGC
GAAGGCAGCCTGGAACAACAGGGCACTCGCTACCGCGGCGGTTTCCGCAAGGGCCTGTACAGCGGCCAGGGC
ACGCTGGACGGCAGCGATGGCAGCCGCTACCAGGGCAGCTTCCGCCAGGGTCGCCTGGAAGGCGAAGGCAGC
TTCAGCGACAGCCAGGGCAACCAGTACGCCGGTACCTTCCGCGACGGGCAACTGAACGGCAAGGGGCGCTGG
AGCGGGCCCGATGGTGACCGCTACGTCGGCCAGTTCAAGGACAACCAGTTCCATGGCCAGGGGCGCTACGAA
AGCGCCAGCGGCGATGTCTGGATCGGCCGCTTCAGCGAAGGCGCGCTGAACGGCCCCGGCGAGCTTCTCGGC
GCCGACGGCAGCCGCTACCGCGGCGGTTTCCAGTTCTGGCGCTTCCATGGCCAGGGCCTGCTCGAACAACTG
GACGGCACCCGCTACGAAGGCGGCTTCGCCGCCGGCGCCTATGCCGGCCAAGGCACCCTGGACCGCGCCGAC
GGCAGCCGTGAGCAGGGACTCTGGGCCGACGGCAAGCGCATCCGCGACGCCGCCGGCAAGGCCCTGCCCGAC
ACCCTGGAAATCGGCCTGTTGGCCCAGGGTCGCCTGCTCGACGAAGAACTGCGCAAGATCCCGGCCTCGACG
CCGGCCAGCGAACTCTATGCCCTGAGCCTGGGCGGCGATGGCCGCCAGGGCGTGTTCCTGCGCGAGGCCGAT
TACGCCGGCGACCTGCTCGGCCAGCGTTTCGCCGCTCGTGGCGTGATTCGCCTGGTCAACCACCGCGACCAC
TTCGGCGACCGCCCGCTGGCTACCCGGGAAAGCCTGTCCCGCGCCGTGCGCACCCTGGCCGAACGCAGCGGG
CCGGAAGACCTGGTCTTCATCTACCTGACCAGCCACGGCTCCAGCGACCACCAGTTGGCCCTGGACATGCCC
GGCCTGAACCTCGGCGACCTGCCGGCCGCGGAACTGGCCGAACTGCTCGCGCCGCTGCGCCAGCGCGACAAG
GTGCTGGTGGTATCGGCCTGCTACAGCGGGGGCTTCATCCCGCCGCTGAAAGACGAACGTACCCTGATCCTG
ACCGCCGCGCGTGCCGACCGGGTCTCGTTCGGCTGTTCCGACGACGCCGACTTCACCTATTTCGGCCGCGCC
TTGCTGGCCAATGCGCTGAACCGCACCGACGATCTGTCCAAAGCGTTCGAACTGGCGAAAGAGGAAGTGCGT
CAAAGGGAGAAGGAGGAAGGTTTCGAAGCTTCGGAACCGCAAGCCTGGTTACCGGAACGCGTGCTCGCGCAC
TGGCGGACGCTGCGGGGGCAGCAAGCCGAGCGCGCGCTCGCGTCCCGGGAAGGAAAAACCGGCGAGGGCGCG
GCGGGCAAATAG
Translation:
MLRPARSLSLCSALVILLAACGEGEPLLPADARLPDGARYRGELVDGRLEGQGRLDYDNGAWYAGRFEHGLL
HGHGTWQGADGSRYSGGFAAGLFDGQGRLAMADGSVYQGGFRQGLFDGEGSLEQQGTRYRGGFRKGLYSGQG
TLDGSDGSRYQGSFRQGRLEGEGSFSDSQGNQYAGTFRDGQLNGKGRWSGPDGDRYVGQFKDNQFHGQGRYE
SASGDVWIGRFSEGALNGPGELLGADGSRYRGGFQFWRFHGQGLLEQLDGTRYEGGFAAGAYAGQGTLDRAD
GSREQGLWADGKRIRDAAGKALPDTLEIGLLAQGRLLDEELRKIPASTPASELYALSLGGDGRQGVFLREAD
YAGDLLGQRFAARGVIRLVNHRDHFGDRPLATRESLSRAVRTLAERSGPEDLVFIYLTSHGSSDHQLALDMP
GLNLGDLPAAELAELLAPLRQRDKVLVVSACYSGGFIPPLKDERTLILTAARADRVSFGCSDDADFTYFGRA
LLANALNRTDDLSKAFELAKEEVRQREKEEGFEASEPQAWLPERVLAHWRTLRGQQAERALASREGKTGEGA
AGK*
AnnotationID:514GeneID:505
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4016
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|13786 COG4642, COG4642, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 139
Score =  166 bits (421), Expect = 2e-41
Identities = 58/139 (41%), Positives = 77/139 (55%)
Genomic Context:
Comment:
MORN repeat family protein
ReferenceID:1013
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18155
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:505

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
889 PA4016_tr translation of PA4016 579 99.82 99.99 0 3038.0
36643 gb|AAG07403.1|AE004818_9 (AE004818) hypothetical protein PA4016 [Pseudomonas aeruginosa PAO1] 579 99.82 99.99 0 3038.0
36644 gb|AAO54275.1| (AE016858) MORN repeat family protein [Pseudomonas syringae pv. tomato str. DC3000] 583 58.49 72.38 12 1812.0
36645 gb|AAN66178.1|AE016245_7 (AE016776) MORN domain protein [Pseudomonas putida KT2440] 653 53.29 63.70 85 1792.0
36646 gb|AAM36699.1| (AE011817) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 629 17.64 25.91 346 413.0
GC ORFID: 43507How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4016Glimmer Score:
Start: 3922815Stop: 3924554
Length: 1740
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4016 translation of PA4016Homolog Bit Score 1174.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3621 (ORF: BLASTX 709.0), t_PA4016 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTCGCCCCGCCAGGTCTCTCTCGCTCTGCTCCGCCCTGGTCATCCTGCTCGCCGCCTGTGGCGAGGGC
GAACCGCTGCTCCCGGCCGATGCGCGCCTGCCGGACGGCGCGCGCTATCGCGGCGAGCTGGTGGACGGGCGC
CTGGAAGGCCAGGGCCGGCTGGACTACGACAACGGCGCCTGGTACGCCGGCCGCTTCGAGCATGGCCTGCTG
CACGGCCATGGCACCTGGCAGGGCGCCGACGGCAGCCGCTACAGCGGTGGCTTCGCGGCCGGCCTGTTCGAC
GGCCAGGGACGCCTGGCGATGGCCGATGGCAGCGTCTACCAGGGCGGCTTCCGCCAGGGCCTGTTCGATGGC
GAAGGCAGCCTGGAACAACAGGGCACTCGCTACCGCGGCGGTTTCCGCAAGGGCCTGTACAGCGGCCAGGGC
ACGCTGGACGGCAGCGATGGCAGCCGCTACCAGGGCAGCTTCCGCCAGGGTCGCCTGGAAGGCGAAGGCAGC
TTCAGCGACAGCCAGGGCAACCAGTACGCCGGTACCTTCCGCGACGGGCAACTGAACGGCAAGGGGCGCTGG
AGCGGGCCCGATGGTGACCGCTACGTCGGCCAGTTCAAGGACAACCAGTTCCATGGCCAGGGGCGCTACGAA
AGCGCCAGCGGCGATGTCTGGATCGGCCGCTTCAGCGAAGGCGCGCTGAACGGCCCCGGCGAGCTTCTCGGC
GCCGACGGCAGCCGCTACCGCGGCGGTTTCCAGTTCTGGCGCTTCCATGGCCAGGGCCTGCTCGAACAACTG
GACGGCACCCGCTACGAAGGCGGCTTCGCCGCCGGCGCCTATGCCGGCCAAGGCACCCTGGACCGCGCCGAC
GGCAGCCGTGAGCAGGGACTCTGGGCCGACGGCAAGCGCATCCGCGACGCCGCCGGCAAGGCCCTGCCCGAC
ACCCTGGAAATCGGCCTGTTGGCCCAGGGTCGCCTGCTCGACGAAGAACTGCGCAAGATCCCGGCCTCGACG
CCGGCCAGCGAACTCTATGCCCTGAGCCTGGGCGGCGATGGCCGCCAGGGCGTGTTCCTGCGCGAGGCCGAT
TACGCCGGCGACCTGCTCGGCCAGCGTTTCGCCGCTCGTGGCGTGATTCGCCTGGTCAACCACCGCGACCAC
TTCGGCGACCGCCCGCTGGCTACCCGGGAAAGCCTGTCCCGCGCCGTGCGCACCCTGGCCGAACGCAGCGGG
CCGGAAGACCTGGTCTTCATCTACCTGACCAGCCACGGCTCCAGCGACCACCAGTTGGCCCTGGACATGCCC
GGCCTGAACCTCGGCGACCTGCCGGCCGCGGAACTGGCCGAACTGCTCGCGCCGCTGCGCCAGCGCGACAAG
GTGCTGGTGGTATCGGCCTGCTACAGCGGGGGCTTCATCCCGCCGCTGAAAGACGAACGTACCCTGATCCTG
ACCGCCGCGCGTGCCGACCGGGTCTCGTTCGGCTGTTCCGACGACGCCGACTTCACCTATTTCGGCCGCGCC
TTGCTGGCCAATGCGCTGAACCGCACCGACGATCTGTCCAAAGCGTTCGAACTGGCGAAAGAGGAAGTGCGT
CAAAGGGAGAAGGAGGAAGGTTTCGAAGCTTCGGAACCGCAAGCCTGGTTACCGGAACGCGTGCTCGCGCAC
TGGCGGACGCTGCGGGGGCAGCAAGCCGAGCGCGCGCTCGCGTCCCGGGAAGGAAAAACCGGCGAGGGCGCG
GCGGGCAAATAG