ViewGene
Locus Name:
GeneID:
Location:

GeneID:5048
TrivialName: PA14_64530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64530
PAO1 Ortholog Locus:PA4881
Sequence Length:342
Protein Length:113
Start: 5749160
Stop: 5749501
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08266.1|AE004901_8 (AE004901) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/113 (99%), Positives = 113/113 (100%)
Sequence:
ATGAAAGCTTCCCTGATCCTCGGCCTCGCCCTCGCCACCCTGACCGCCAACGCCGCCTTCGCCGCCGACGGC
TCCAGCCGCACCATCGACCGGCTGCACCAGGACATGTCCAGCGTCGAACTGCGCATCGCCGACAACGGCAGC
GAGCAGACCATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAG
CAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGTCTGGCCGACAACGGCAGCGAACAG
ACCGTGGACCGCCTGCATCGCAGCATGAGCCGTTTCGACCTGCGCACCGCCTGA
Translation:
MKASLILGLALATLTANAAFAADGSSRTIDRLHQDMSSVELRIADNGSEQTIDRLHKDMTKAEARLADNGSE
QTVDRLHKDMTKAEARLADNGSEQTVDRLHRSMSRFDLRTA*
AnnotationID:5053GeneID:5048
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4881
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10096




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7454
                           PA4881_tr
                           translation of PA4881
                           113
                           99.11
                           99.99
                           0
                           550.0
     

     
     
192756
                           gb|AAG08266.1|AE004901_8
                           (AE004901) hypothetical protein PA4881 [Pseudomonas aeruginosa PAO1]
                           113
                           99.11
                           99.99
                           0
                           550.0
     

     
     
7455
                           PA4623_tr
                           translation of PA4623
                           133
                           57.89
                           67.66
                           24
                           356.0
     

     
     
192757
                           gb|AAG08011.1|AE004876_6
                           (AE004876) hypothetical protein PA4623 [Pseudomonas aeruginosa PAO1]
                           133
                           57.89
                           67.66
                           24
                           356.0
     

     






      

          
GC ORFID: 48050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4881Glimmer Score: 

          
Start: 5012841Stop: 5013182

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4881 translation of PA4881Homolog Bit Score 216.0

          
Other Homologs:  t_PA4623 (ORF: BLASTX 139.0), t_PA4881 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCTTCCCTGATCCTCGGCCTCGCCCTCGCCACCCTGACCGCCAACGCCGCCTTCGCCGCCGACGGC 
TCCAGCCGCACCATCGACCGGCTGCACCAGGACATGTCCAGCGTCGAACTGCGCATCGCCGACAACGGCAGC 
GAGCAGACCATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAG 
CAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGTCTGGCCGACAACGGCAGCGAACAG 
ACCGTGGACCGCCTGCATCGCAGCATGAGCCGTTTCGACCTGCGCACCGCCTGA