ViewGene

Locus Name:
GeneID:
Location:

GeneID:5047
TrivialName: PA14_64190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64190
PAO1 Ortholog Locus:PA4853
Sequence Length:324
Protein Length:107
Start: 5719308
Stop: 5719631
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08238.1|AE004898_9 (AE004898) DNA-binding protein Fis [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGACAACGATGACGACCGAGACTTTAGTGAGTGGAACAACGCCCGTGAGCGACAACGCCAACCTGAAACAG
CACCTCACCACGCCGACGCAAGAAGGGCAGACCCTGCGCGACAGCGTGGAGAAGGCATTGCACAACTACTTC
GCCCACCTCGAAGGGCAGCCGGTCACGGACGTTTACAACATGGTGCTCTGCGAAGTCGAAGCGCCGCTGCTG
GAAACCGTCATGAACCACGTCAAGGGGAACCAGACCAAGGCCTCCGAGCTGCTCGGCCTGAACCGCGGGACC
CTGCGCAAGAAACTCAAGCAATACGACCTTCTTTAA
Translation:
MTTMTTETLVSGTTPVSDNANLKQHLTTPTQEGQTLRDSVEKALHNYFAHLEGQPVTDVYNMVLCEVEAPLL
ETVMNHVKGNQTKASELLGLNRGTLRKKLKQYDLL*
AnnotationID:5052GeneID:5047
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 09:09:23
Gene Name:fis
Confidence Code:2
GeneProduct:DNA-binding protein Fis
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:factor for inversion stimulation
Functional Category Confidence Code:5
COGs:COG2901
Secondary Functional Category(ies):DNA replication, recombination, and repair
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70390.1|AE016680_10 (AE016792) DNA-binding protein Fis [Pseudomonas putida KT2440]
          Length = 106

 Score =  186 bits (473), Expect = 2e-47
 Identities = 92/105 (87%), Positives = 98/105 (93%)

>gb|AAO58294.1| (AE016873) DNA-binding protein Fis [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 104

 Score =  184 bits (468), Expect = 6e-47
 Identities = 92/104 (88%), Positives = 97/104 (93%)

>gb|AAN53476.1|AE015487_10 (AE015487) DNA-binding protein Fis [Shewanella oneidensis MR-1]
          Length = 101

 Score = 98.6 bits (244), Expect = 6e-21
 Identities = 45/77 (58%), Positives = 62/77 (80%)

Structural Features:
COG2901, Fis, Factor for inversion stimulation Fis, transcriptional activator 
[Transcription / DNA replication, recombination, and repair] 
CD-Length = 98 residues, 100.0% aligned
Score =  127 bits (321), Expect = 2e-31
Identities = 50/99 (50%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Genomic Context:
Comment:
ReferenceID:10094
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27235
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35201
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5047_cdd.html
URL:
ReferenceID:35974
Author/Investigator(s): Osuna R, Lienau D, Hughes KT, Johnson RC.
Title: Sequence, regulation, and functions of fis in Salmonella typhimurium.
PubMed: 7536730
MedLine:
Source:
J Bacteriol. 1995 Apr;177(8):2021-32.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7536730
ReferenceID:35975
Author/Investigator(s): Koch C, Vandekerckhove J, Kahmann R.
Title: Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene.
PubMed: 2837762
MedLine:
Source:
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4237-41.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2837762
Homologs By Global Alignment
Gene ID:5047

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7453 PA4853_tr translation of PA4853 107 99.99 99.99 0 549.0
192753 gb|AAG08238.1|AE004898_9 (AE004898) DNA-binding protein Fis [Pseudomonas aeruginosa PAO1] 107 99.99 99.99 0 549.0
192754 gb|AAN70390.1|AE016680_10 (AE016792) DNA-binding protein Fis [Pseudomonas putida KT2440] 107 85.98 91.58 1 472.0
192755 gb|AAO58294.1| (AE016873) DNA-binding protein Fis [Pseudomonas syringae pv. tomato str. DC3000] 107 85.98 90.65 3 468.0
GC ORFID: 48049How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4853Glimmer Score:
Start: 4982988Stop: 4983311
Length: 324
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4853 translation of PA4853Homolog Bit Score 216.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5775 (ORF: BLASTX 186.0)
GC ORF Sequence
ATGACAACGATGACGACCGAGACTTTAGTGAGTGGAACAACGCCCGTGAGCGACAACGCCAACCTGAAACAG
CACCTCACCACGCCGACGCAAGAAGGGCAGACCCTGCGCGACAGCGTGGAGAAGGCATTGCACAACTACTTC
GCCCACCTCGAAGGGCAGCCGGTCACGGACGTTTACAACATGGTGCTCTGCGAAGTCGAAGCGCCGCTGCTG
GAAACCGTCATGAACCACGTCAAGGGGAACCAGACCAAGGCCTCCGAGCTGCTCGGCCTGAACCGCGGGACC
CTGCGCAAGAAACTCAAGCAATACGACCTTCTTTAA