ViewGene
Locus Name:
GeneID:
Location:

GeneID:5046
TrivialName: PA14_62180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62180
PAO1 Ortholog Locus:PA4698
Sequence Length:330
Protein Length:109
Start: 5549104
Stop: 5548775
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08084.1|AE004884_2 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/109 (99%), Positives = 109/109 (100%)
Sequence:
ATGGATCGACGGGTCTATGCGCTGGCCGACCAGTTGTTGCTGATCGAGCGTGAGTTGCGTGCCCTCGGCTGG
TGGAGCGAAAGCAGCCCCGCCCCGGAAGCGCTGGCCAGCCCCGAGCCGTTCTGCGTGGATACGCTGGCGCTC
GAGCAATGGCTGCAATGGATCTTCCTGCCACGGATGAAGCTGATTCTCGAAAGCGACAGCGCCTTGCCGCAA
GCCTCGGGTATCCTGGCCATGGCCGAGGTGGCCTATGCGCAGCGTGGCGAGGAAGTCGCCGGCCTGCTGGCG
GCGCTTGGCGAGTTCGACCGGCTGATCGGCGGGCCGTCATGA
Translation:
MDRRVYALADQLLLIERELRALGWWSESSPAPEALASPEPFCVDTLALEQWLQWIFLPRMKLILESDSALPQ
ASGILAMAEVAYAQRGEEVAGLLAALGEFDRLIGGPS*
AnnotationID:5051GeneID:5046
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4698
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81805.1|AE016765_207 (AE016765) Hypothetical protein yqcC [Escherichia coli CFT073]
          Length = 109

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 33/94 (35%), Positives = 49/94 (52%)

>gb|AAL21845.1| (AE008835) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 109

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 31/94 (32%), Positives = 49/94 (52%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10092




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27233




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5046
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7452
                           PA4698_tr
                           translation of PA4698
                           109
                           99.08
                           99.99
                           0
                           550.0
     

     
     
192750
                           gb|AAG08084.1|AE004884_2
                           (AE004884) hypothetical protein PA4698 [Pseudomonas aeruginosa PAO1]
                           109
                           99.08
                           99.99
                           0
                           550.0
     

     
     
192751
                           gb|AAO54513.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           109
                           60.55
                           69.72
                           0
                           319.0
     

     
     
192752
                           gb|AAN70254.1|AE016665_7
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           112
                           54.46
                           66.07
                           4
                           302.0
     

     






      

          
GC ORFID: 48048How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4698Glimmer Score: 

          
Start: 4812784Stop: 4812455

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4698 translation of PA4698Homolog Bit Score 216.0

          
Other Homologs:  psyr_15may02_Scaffold19_revised_gene2872 (ORF: BLASTX 128.0), t_PA4698 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGACGGGTCTATGCGCTGGCCGACCAGTTGTTGCTGATCGAGCGTGAGTTGCGTGCCCTCGGCTGG 
TGGAGCGAAAGCAGCCCCGCCCCGGAAGCGCTGGCCAGCCCCGAGCCGTTCTGCGTGGATACGCTGGCGCTC 
GAGCAATGGCTGCAATGGATCTTCCTGCCACGGATGAAGCTGATTCTCGAAAGCGACAGCGCCTTGCCGCAA 
GCCTCGGGTATCCTGGCCATGGCCGAGGTGGCCTATGCGCAGCGTGGCGAGGAAGTCGCCGGCCTGCTGGCG 
GCGCTTGGCGAGTTCGACCGGCTGATCGGCGGGCCGTCATGA