ViewGene
Locus Name:
GeneID:
Location:

GeneID:5045
TrivialName: PA14_42280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42280
PAO1 Ortholog Locus:PA1722
Sequence Length:339
Protein Length:112
Start: 3771000
Stop: 3770662
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05111.1|AE004598_10 (AE004598) type III export protein PscI [Pseudomonas aeruginosa PAO1]
Identities = 111/112 (99%), Positives = 112/112 (100%)
Sequence:
ATGGATATCTCTCGGATGGGCGCCCAGGCGCAGATCACCAGTCTCGAAGAACTCTCCGGCGGCCCGGCCGGC
GCGGCCCACGTCGCCGAGTTCGAACGGGCGATGGGCGGTGCCGGCAGCCTGGGCGGCGACCTGCTCAGCGAA
CTGGGGCAGATCAGGGAGCGTTTCAGCCAGGCCAAGCAGGAGTTGCAGGTGGAGCTGTCGACGCCCGGCGAC
GATCCCAACAGCCTGATGCAGATGCAGTGGTCGCTGATGCGCATCACCATGCAGGAAGAGCTGATCGCCAAG
ACCGTCGGGCGCATGAGCCAGAACGTCGAAACCCTGATGAAGACCCAATGA
Translation:
MDISRMGAQAQITSLEELSGGPAGAAHVAEFERAMGGAGSLGGDLLSELGQIRERFSQAKQELQVELSTPGD
DPNSLMQMQWSLMRITMQEELIAKTVGRMSQNVETLMKTQ*
AnnotationID:5050GeneID:5045
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:40
Gene Name:pscI
Confidence Code:1
GeneProduct:type III export protein PscI
Cell Localization:()
Synonyms:yscI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18028.1| (AY144116) LscI [Photorhabdus luminescens]
          Length = 112

 Score =  132 bits (331), Expect = 5e-31
 Identities = 67/113 (59%), Positives = 90/113 (79%), Gaps = 2/113 (1%)

>gb|AAD16842.1| (AF102990) YscI [Yersinia enterocolitica]
          Length = 115

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 1/100 (1%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10090




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37842




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5045
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7451
                           PA1722_tr
                           translation of PA1722
                           112
                           99.10
                           99.99
                           0
                           551.0
     

     
     
192746
                           gb|AAG05111.1|AE004598_10
                           (AE004598) type III export protein PscI [Pseudomonas aeruginosa PAO1]
                           112
                           99.10
                           99.99
                           0
                           551.0
     

     
     
192747
                           gb|AAC44780.1|
                           (U56077) PscI [Pseudomonas aeruginosa]
                           113
                           98.23
                           99.11
                           1
                           550.0
     

     
     
192748
                           gb|AAO18028.1|
                           (AY144116) LscI [Photorhabdus luminescens]
                           113
                           59.29
                           79.64
                           2
                           335.0
     

     
     
192749
                           emb|CAE16156.1|
                           (BX571871) Type III secretion component protein SctI [Photorhabdus luminescens subsp. laumondii TTO1]
                           113
                           55.75
                           77.87
                           2
                           315.0
     

     






      

          
GC ORFID: 48047How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1722Glimmer Score: 

          
Start: 1182909Stop: 1183247

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1722 translation of PA1722Homolog Bit Score 216.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGATATCTCTCGGATGGGCGCCCAGGCGCAGATCACCAGTCTCGAAGAACTCTCCGGCGGCCCGGCCGGC 
GCGGCCCACGTCGCCGAGTTCGAACGGGCGATGGGCGGTGCCGGCAGCCTGGGCGGCGACCTGCTCAGCGAA 
CTGGGGCAGATCAGGGAGCGTTTCAGCCAGGCCAAGCAGGAGTTGCAGGTGGAGCTGTCGACGCCCGGCGAC 
GATCCCAACAGCCTGATGCAGATGCAGTGGTCGCTGATGCGCATCACCATGCAGGAAGAGCTGATCGCCAAG 
ACCGTCGGGCGCATGAGCCAGAACGTCGAAACCCTGATGAAGACCCAATGA