ViewGene
Locus Name:
GeneID:
Location:

GeneID:5043
TrivialName: PA14_44530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44530
PAO1 Ortholog Locus:PA1540
Sequence Length:330
Protein Length:109
Start: 3964934
Stop: 3965263
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04929.1|AE004582_7 (AE004582) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 108/109 (99%), Positives = 108/109 (99%)
Sequence:
ATGCTGACCCTGAACTGGATTCCCTTCGCCTGGCTCGGCCTGGCGATCGCCCTCGAGGTCGTCGCCAACCTG
CTGTTGAAATACTCCGACGGTTTCCGCAGGCGCGGCCTCGGGATCGCCTCGATCCTCTGCGTGATGGCCGCC
TTCACCGCGCTGGCGCAGGCGGTGAAGGACATCGAGCTGTCACTCGCCTATGCGATCTGGGGCGGCTTCGGT
ATCCTCGCCACCGTCGCCATGGGCTGGGCGCTGTTCGGCCAGCGCCTGGCCTGGCGCGGCTGGCTCGGCCTG
TTGCTGCTGCTGGTCGGCATGAGCCTGCTCAAGCTGGCCTGA
Translation:
MLTLNWIPFAWLGLAIALEVVANLLLKYSDGFRRRGLGIASILCVMAAFTALAQAVKDIELSLAYAIWGGFG
ILATVAMGWALFGQRLAWRGWLGLLLLLVGMSLLKLA*
AnnotationID:5048GeneID:5043
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 14:02:08
Gene Name:
Confidence Code:3
GeneProduct:putative membrane transporter of cations and cationic drugs
Cell Localization:()
Synonyms:ygdE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2076,pfam00893
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20402.1| (AE008764) putative membrane transporter of cations and cationic
           drugs [Salmonella typhimurium LT2]
          Length = 109

 Score =  145 bits (365), Expect = 6e-35
 Identities = 69/109 (63%), Positives = 87/109 (79%)

>gb|AAM85801.1|AE013827_2 (AE013827) possible chaperone [Yersinia pestis KIM]
          Length = 115

 Score =  145 bits (365), Expect = 6e-35
 Identities = 71/109 (65%), Positives = 89/109 (81%)

>gb|AAC74671.1| (AE000255) possible chaperone [Escherichia coli K12]
          Length = 109

 Score =  145 bits (365), Expect = 6e-35
 Identities = 68/109 (62%), Positives = 87/109 (79%)






 
Structural Features:
COG2076, EmrE, Membrane transporters of cations and cationic drugs 
[Inorganic ion transport and metabolism]
CD-Length = 106 residues,  98.1% aligned
Score = 82.4 bits (204), Expect = 1e-17
Identities = 48/104 (46%), Positives = 63/104 (60%)

pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein. 
CD-Length = 93 residues, 100.0% aligned
Score = 67.1 bits (164), Expect = 4e-13
Identities = 34/93 (36%), Positives = 57/93 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10086




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37284




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5043_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5043
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7449
                           PA1540_tr
                           translation of PA1540
                           109
                           99.08
                           99.08
                           0
                           549.0
     

     
     
192726
                           gb|AAG04929.1|AE004582_7
                           (AE004582) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           109
                           99.08
                           99.08
                           0
                           549.0
     

     
     
192727
                           gb|AAL20402.1|
                           (AE008764) putative membrane transporter of cations and cationic drugs [Salmonella typhimurium LT2]
                           109
                           63.30
                           79.81
                           0
                           365.0
     

     
     
192728
                           gb|AAO69047.1|
                           (AE016838) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           109
                           63.30
                           79.81
                           0
                           365.0
     

     
     
192732
                           emb|CAD01831.1|
                           (AL627270) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi]
                           109
                           63.30
                           79.81
                           0
                           365.0
     

     






      

          
GC ORFID: 48045How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1540Glimmer Score: 

          
Start: 988975Stop: 988646

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1540 translation of PA1540Homolog Bit Score 216.0

          
Other Homologs:  t_PA1540 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACCCTGAACTGGATTCCCTTCGCCTGGCTCGGCCTGGCGATCGCCCTCGAGGTCGTCGCCAACCTG 
CTGTTGAAATACTCCGACGGTTTCCGCAGGCGCGGCCTCGGGATCGCCTCGATCCTCTGCGTGATGGCCGCC 
TTCACCGCGCTGGCGCAGGCGGTGAAGGACATCGAGCTGTCACTCGCCTATGCGATCTGGGGCGGCTTCGGT 
ATCCTCGCCACCGTCGCCATGGGCTGGGCGCTGTTCGGCCAGCGCCTGGCCTGGCGCGGCTGGCTCGGCCTG 
TTGCTGCTGCTGGTCGGCATGAGCCTGCTCAAGCTGGCCTGA