ViewGene
Locus Name:
GeneID:
Location:

GeneID:5041
TrivialName: PA14_14750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14750
PAO1 Ortholog Locus:PA3812
Sequence Length:324
Protein Length:107
Start: 1256021
Stop: 1256344
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07199.1|AE004799_5 (AE004799) probable iron-binding protein IscA [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGGCCATCAGCATGACCGAAGCCGCCGCCAAACACGTGCAGCGCTCCCTCGAGGGGCGCGGCAAGGGCGAG
GGTATCCGTCTTGGCGTGCGCACCACTGGCTGTTCCGGGCTTGCCTATGTCCTCGAATTCGTCGATGAACTG
GCGGCCGAGGACCTGGTCTTCGAGAGCCATGGCGTGAAGGTCATCATCGACCCGAAAAGCCTGGTCTATCTC
GATGGCACCGAGCTGGACTTCACTCGCGAAGGGCTCAACGAAGGCTTCAAGTTCAACAATCCCAACGTTCGT
GGCGAATGCGGCTGCGGCGAAAGCTTCAACGTCTGA
Translation:
MAISMTEAAAKHVQRSLEGRGKGEGIRLGVRTTGCSGLAYVLEFVDELAAEDLVFESHGVKVIIDPKSLVYL
DGTELDFTREGLNEGFKFNNPNVRGECGCGESFNV*
AnnotationID:5046GeneID:5041
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 12:12:15
Gene Name:
Confidence Code:3
GeneProduct:putative iron-binding protein IscA
Cell Localization:()
Synonyms:icsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0316,pfam01521
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66469.1|AE016276_4 (AE016777) iron-binding protein IscA [Pseudomonas putida KT2440]
          Length = 107

 Score =  204 bits (518), Expect = 1e-52
 Identities = 98/107 (91%), Positives = 103/107 (96%)

>gb|AAO54946.1| (AE016860) iron-binding protein IscA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 107

 Score =  200 bits (508), Expect = 1e-51
 Identities = 96/107 (89%), Positives = 101/107 (94%)






 
Structural Features:
COG0316, IscA, Uncharacterized conserved protein
CD-Length = 110 residues,  98.2% aligned
Score =  143 bits (362), Expect = 7e-36
Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

pfam01521, HesB, HesB-like domain.
CD-Length = 106 residues,  99.1% aligned
Score =  138 bits (350), Expect = 2e-34
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10082




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31744




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5041_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5041
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7447
                           PA3812_tr
                           translation of PA3812
                           107
                           99.99
                           99.99
                           0
                           554.0
     

     
     
192473
                           gb|AAG07199.1|AE004799_5
                           (AE004799) probable iron-binding protein IscA [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           554.0
     

     
     
192474
                           gb|AAN66469.1|AE016276_4
                           (AE016777) iron-binding protein IscA [Pseudomonas putida KT2440]
                           107
                           91.58
                           96.26
                           0
                           518.0
     

     
     
192476
                           gb|AAO54946.1|
                           (AE016860) iron-binding protein IscA [Pseudomonas syringae pv. tomato str. DC3000]
                           107
                           89.71
                           94.39
                           0
                           508.0
     

     
     
192475
                           gb|AAC24474.1|
                           (AF010139) IscA [Azotobacter vinelandii]
                           107
                           87.85
                           98.13
                           0
                           516.0
     

     






      

          
GC ORFID: 48043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3812Glimmer Score: 

          
Start: 3697917Stop: 3697594

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3812 translation of PA3812Homolog Bit Score 218.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4519 (ORF: BLASTX 201.0), t_PA3812 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATCAGCATGACCGAAGCCGCCGCCAAACACGTGCAGCGCTCCCTCGAGGGGCGCGGCAAGGGCGAG 
GGTATCCGTCTTGGCGTGCGCACCACTGGCTGTTCCGGGCTTGCCTATGTCCTCGAATTCGTCGATGAACTG 
GCGGCCGAGGACCTGGTCTTCGAGAGCCATGGCGTGAAGGTCATCATCGACCCGAAAAGCCTGGTCTATCTC 
GATGGCACCGAGCTGGACTTCACTCGCGAAGGGCTCAACGAAGGCTTCAAGTTCAACAATCCCAACGTTCGT 
GGCGAATGCGGCTGCGGCGAAAGCTTCAACGTCTGA