ViewGene

Locus Name:
GeneID:
Location:

GeneID:5040
TrivialName: PA14_14430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14430
PAO1 Ortholog Locus:
Sequence Length:378
Protein Length:125
Start: 1231207
Stop: 1231584
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07222.1|AE004800_11 (AE004800) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 106/109 (97%), Positives = 108/109 (99%)
Sequence:
TTGTTATGGCTGCTATTCACATCAATATCAGCCCACGCCATCGACAAGAAAGTCAACAACGTCACCATCATG
CGTGTGGGCTTTATGGTGGACGCGAATTCTCCGGGTGGAGGCTGGGGCTTCATCGTCAGCAAGCCGGGAGCG
GCGGATTGCGGCTTTGGCCTGATGCGCCTGCCGCCGATGAATACCGATGCCGGCAAGGCCATGCTGTCGCTG
ATGCTGAGCGGCCAGGCCACACAGAACAAACTGCCGGAAATCGCCTATTCGGCCAGCGCCACGGTGAACGCG
GTATGCCAGATCACTTCGGCGCAGATAGACAGCGGCGCCTGGGGAGAAAGGTACGAGGCCGCAGCCCCGTAC
CTAGGCGAGAGTGCTTAG
Translation:
MLWLLFTSISAHAIDKKVNNVTIMRVGFMVDANSPGGGWGFIVSKPGAADCGFGLMRLPPMNTDAGKAMLSL
MLSGQATQNKLPEIAYSASATVNAVCQITSAQIDSGAWGERYEAAAPYLGESA*
AnnotationID:5045GeneID:5040
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:13
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15242
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27221
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5040

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7446 PA3835_tr translation of PA3835 132 81.06 81.81 23 549.0
192472 gb|AAG07222.1|AE004800_11 (AE004800) hypothetical protein PA3835 [Pseudomonas aeruginosa PAO1] 132 81.06 81.81 23 549.0
GC ORFID: 48042How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3835Glimmer Score:
Start: 3722731Stop: 3722354
Length: 378
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3835 translation of PA3835Homolog Bit Score 218.0
Other Homologs: t_PA3835 (ORF: GLIMMER)
GC ORF Sequence
TTGTTATGGCTGCTATTCACATCAATATCAGCCCACGCCATCGACAAGAAAGTCAACAACGTCACCATCATG
CGTGTGGGCTTTATGGTGGACGCGAATTCTCCGGGTGGAGGCTGGGGCTTCATCGTCAGCAAGCCGGGAGCG
GCGGATTGCGGCTTTGGCCTGATGCGCCTGCCGCCGATGAATACCGATGCCGGCAAGGCCATGCTGTCGCTG
ATGCTGAGCGGCCAGGCCACACAGAACAAACTGCCGGAAATCGCCTATTCGGCCAGCGCCACGGTGAACGCG
GTATGCCAGATCACTTCGGCGCAGATAGACAGCGGCGCCTGGGGAGAAAGGTACGAGGCCGCAGCCCCGTAC
CTAGGCGAGAGTGCTTAG