ViewGene
Locus Name:
GeneID:
Location:

GeneID:504
TrivialName: PA14_42350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42350
PAO1 Ortholog Locus:PA1716
Sequence Length:1803
Protein Length:600
Start: 3775306
Stop: 3773504
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC44774.1| (U56077) PscC [Pseudomonas aeruginosa]
Identities = 598/600 (99%), Positives = 599/600 (99%)
Sequence:
ATGCGCCGCCTGCTGATCGGCGGACTGCTGGCGCTGCTGCCTGGCGCGGTCTTGCGCGCGCAGCCGCTGGAC
TGGCCCAGCCTGCCTTACGACTATGTGGCGCAGGGCGAAAGCCTGCGCGACGTGCTGGCCAACTTCGGCGCC
AACTACGATGCCTCGGTGATCGTCAGCGACAAGGTCAACGACCAGGTCAGCGGTCGCTTCGACCTGGAAAGC
CCGCAGgcCTtCCTGCAGTTGATGGCCTCCCTCTACAACCTCGGCTGGTACTACGACGGCACCGTGCTGTAC
GTATTCAAGACCACCGAGATGCAGTCGCGGCTGGTGAGGCTGGAGCAGGTCGGCGAGGCCGAGCTGAAGCGC
GCGCTGACCGCCGCCGGCATCTGGGAACCGCGCTTCGGCTGGCGTGCCGACCCTTCCGGGCGGCTGGTGCAC
GTGTCCGGTCCGGGGCGCTATCTCGAACTGGTCGAGCAGACCGCCCAGGTGCTGGAGCAGCAATACACCCTG
CGCAGCGAAAAGACCGGCGACCTCAGCGTGGAGATCTTCCCGCTGCGCTATGCGGTCGCCGAGGACCGCAAG
ATCGAGTACCGCGACGACGAGATCGAGGCGCCGGGCATCGCCAGCATCCTCTCGCGGGTGCTCAGCGATGCC
AACGTGGTTGCGGTGGGCGACGAGCCGGGCAAGCTGCGCCCGGGACCGCAATCGAGCCATGCGGTGGTCCAG
GCGGAACCGTCGCTGAACGCGGTGGTGGTGCGCGACCACAAGGACCGGTTGCCCATGTATCGCCGCCTGATC
GAAGCCCTCGACCGGCCCTCGGCGCGGATCGAGGTCGGCTTGTCGATCATCGACATCAATGCCGAGAACCTC
GCCCAGCTGGGCGTCGACTGGAGCGCCGGGATTCGCCTGGGCAACAACAAGTCGATCCAGATCCGCACCACC
GGCCAGGATAGCGAGGAGGGCGGCGGCGCCGGTAACGGCGCGGTCGGCAGCCTGGTGGACAGTCGCGGGCTG
GATTTCCTGCTGGCCAAGGTCACCCTGTTGCAGAGCCAGGGGCAGGCGCAGATCGGATCCCGGCCGACCCTG
CTGACCCAGGAGAATACCCAGGCGGTGCTCGACCAGAGCGAAACCTACTATGTGCGGGTCACGGGCGAGCGG
GTGGCCGAGCTGAAGGCGATCACCTACGGCACCATGCTGAAAATGACGCCGCGAGTGGTGACTCTCGGCGAT
ACGCCGGAGATCAGCCTCAGCCTGCACATCGAGGACGGCAGCCAGAAACCCAACAGCGCCGGCCTGGACAAG
ATCCCCACGATCAACCGCACGGTGATCGATACCATCGCCCGCGTGGGCCATGGCCAGAGCCTGCTGATCGGC
GGCATCTACCGCGACGAACTGAGCCAGAGCCAGCGCAAGGTACCCTGGCTCGGCGACATTCCCTATCTCGGC
GCGCTGTTCCGCACTACCGCGGACACCGTGCGCCGCTCGGTGCGGCTGTTCCTCATCGAGCCGCGGCTGATC
GACGATGGCGTCGGCCATTACCTGGCGCTGAACAACCGTCGCGACCTGCGCGGTGGCCTGCTTGAAGTCGAC
GAGTTGTCGAACCAGAGCCTGTCGTTGCGCAAGCTGCTCGGTAGCGCCCGTTGCCAGGCGCTGGCGCCGGCC
AGGGCCGAACAGGAGCGCTTGCGCCAGGCCGGCCAGGGTTCGTTCCTCACGCCCTGCCGGATGGGTGCGCAG
GAGGGCTGGCGGGTGACCGACAGCGCCTGTCCCAAGGACGGCGCCTGGTGCGTCGGCGCGGAGCGCGGGAAT
TAG
Translation:
MRRLLIGGLLALLPGAVLRAQPLDWPSLPYDYVAQGESLRDVLANFGANYDASVIVSDKVNDQVSGRFDLES
PQAFLQLMASLYNLGWYYDGTVLYVFKTTEMQSRLVRLEQVGEAELKRALTAAGIWEPRFGWRADPSGRLVH
VSGPGRYLELVEQTAQVLEQQYTLRSEKTGDLSVEIFPLRYAVAEDRKIEYRDDEIEAPGIASILSRVLSDA
NVVAVGDEPGKLRPGPQSSHAVVQAEPSLNAVVVRDHKDRLPMYRRLIEALDRPSARIEVGLSIIDINAENL
AQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRPTL
LTQENTQAVLDQSETYYVRVTGERVAELKAITYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDK
IPTINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLI
DDGVGHYLALNNRRDLRGGLLEVDELSNQSLSLRKLLGSARCQALAPARAEQERLRQAGQGSFLTPCRMGAQ
EGWRVTDSACPKDGAWCVGAERGN*
AnnotationID:513GeneID:504
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:26
Gene Name:pscC
Confidence Code:1
GeneProduct:Type III secretion outer membrane protein PscC precursor
Cell Localization:()
Synonyms:yscC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1450,pfam00263
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18033.1| (AY144116) LscC [Photorhabdus luminescens]
          Length = 621

 Score =  767 bits (1981), Expect = 0.0
 Identities = 384/587 (65%), Positives = 462/587 (78%), Gaps = 6/587 (1%)

>gb|AAN37542.1| (AY150843) YscC [Yersinia enterocolitica]
          Length = 607

 Score =  748 bits (1932), Expect = 0.0
 Identities = 378/602 (62%), Positives = 474/602 (78%), Gaps = 13/602 (2%)

>gb|AAC69781.1| (AF074612) type III secretion protein [Yersinia pestis KIM]
          Length = 607

 Score =  744 bits (1921), Expect = 0.0
 Identities = 377/599 (62%), Positives = 467/599 (77%), Gaps = 7/599 (1%)








 
Structural Features:
COG1450, PulD, Type II secretory pathway, component PulD 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 587 residues,  99.0% aligned
Score =  437 bits (1124), Expect = 2e-123
Identities = 190/598 (31%), Positives = 273/598 (45%), Gaps = 60/598 (10%)

pfam00263, Secretin_C, Bacterial type II and III secretion system protein.
CD-Length = 232 residues, 100.0% aligned
Score =  177 bits (450), Expect = 4e-45
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 13/239 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1011




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37208




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:504_cdd.html


    		




 
URL:

















    ReferenceID:37838




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:504
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
36630
                           gb|AAC44774.1|
                           (U56077) PscC [Pseudomonas aeruginosa]
                           600
                           99.66
                           99.83
                           0
                           3044.0
     

     
     
888
                           PA1716_tr
                           translation of PA1716
                           600
                           99.50
                           99.66
                           0
                           3036.0
     

     
     
36631
                           gb|AAG05105.1|AE004598_4
                           (AE004598) Type III secretion outer membrane protein PscC precursor [Pseudomonas aeruginosa PAO1]
                           600
                           99.50
                           99.66
                           0
                           3036.0
     

     
     
36633
                           emb|CAE16150.1|
                           (BX571871) Type III secretion component protein SctC [Photorhabdus luminescens subsp. laumondii TTO1]
                           618
                           63.43
                           76.69
                           22
                           1981.0
     

     
     
36632
                           gb|AAO18033.1|
                           (AY144116) LscC [Photorhabdus luminescens]
                           625
                           62.08
                           75.20
                           29
                           1986.0
     

     






      

          
GC ORFID: 43506How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1716Glimmer Score: 

          
Start: 1178603Stop: 1180405

          
Length: 1803


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1716 translation of PA1716Homolog Bit Score 1174.0

          
Other Homologs:  t_PA1716 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCCTGCTGATCGGCGGACTGCTGGCGCTGCTGCCTGGCGCGGTCTTGCGCGCGCAGCCGCTGGAC 
TGGCCCAGCCTGCCTTACGACTATGTGGCGCAGGGCGAAAGCCTGCGCGACGTGCTGGCCAACTTCGGCGCC 
AACTACGATGCCTCGGTGATCGTCAGCGACAAGGTCAACGACCAGGTCAGCGGTCGCTTCGACCTGGAAAGC 
CCGCAGgcCTtCCTGCAGTTGATGGCCTCCCTCTACAACCTCGGCTGGTACTACGACGGCACCGTGCTGTAC 
GTATTCAAGACCACCGAGATGCAGTCGCGGCTGGTGAGGCTGGAGCAGGTCGGCGAGGCCGAGCTGAAGCGC 
GCGCTGACCGCCGCCGGCATCTGGGAACCGCGCTTCGGCTGGCGTGCCGACCCTTCCGGGCGGCTGGTGCAC 
GTGTCCGGTCCGGGGCGCTATCTCGAACTGGTCGAGCAGACCGCCCAGGTGCTGGAGCAGCAATACACCCTG 
CGCAGCGAAAAGACCGGCGACCTCAGCGTGGAGATCTTCCCGCTGCGCTATGCGGTCGCCGAGGACCGCAAG 
ATCGAGTACCGCGACGACGAGATCGAGGCGCCGGGCATCGCCAGCATCCTCTCGCGGGTGCTCAGCGATGCC 
AACGTGGTTGCGGTGGGCGACGAGCCGGGCAAGCTGCGCCCGGGACCGCAATCGAGCCATGCGGTGGTCCAG 
GCGGAACCGTCGCTGAACGCGGTGGTGGTGCGCGACCACAAGGACCGGTTGCCCATGTATCGCCGCCTGATC 
GAAGCCCTCGACCGGCCCTCGGCGCGGATCGAGGTCGGCTTGTCGATCATCGACATCAATGCCGAGAACCTC 
GCCCAGCTGGGCGTCGACTGGAGCGCCGGGATTCGCCTGGGCAACAACAAGTCGATCCAGATCCGCACCACC 
GGCCAGGATAGCGAGGAGGGCGGCGGCGCCGGTAACGGCGCGGTCGGCAGCCTGGTGGACAGTCGCGGGCTG 
GATTTCCTGCTGGCCAAGGTCACCCTGTTGCAGAGCCAGGGGCAGGCGCAGATCGGATCCCGGCCGACCCTG 
CTGACCCAGGAGAATACCCAGGCGGTGCTCGACCAGAGCGAAACCTACTATGTGCGGGTCACGGGCGAGCGG 
GTGGCCGAGCTGAAGGCGATCACCTACGGCACCATGCTGAAAATGACGCCGCGAGTGGTGACTCTCGGCGAT 
ACGCCGGAGATCAGCCTCAGCCTGCACATCGAGGACGGCAGCCAGAAACCCAACAGCGCCGGCCTGGACAAG 
ATCCCCACGATCAACCGCACGGTGATCGATACCATCGCCCGCGTGGGCCATGGCCAGAGCCTGCTGATCGGC 
GGCATCTACCGCGACGAACTGAGCCAGAGCCAGCGCAAGGTACCCTGGCTCGGCGACATTCCCTATCTCGGC 
GCGCTGTTCCGCACTACCGCGGACACCGTGCGCCGCTCGGTGCGGCTGTTCCTCATCGAGCCGCGGCTGATC 
GACGATGGCGTCGGCCATTACCTGGCGCTGAACAACCGTCGCGACCTGCGCGGTGGCCTGCTTGAAGTCGAC 
GAGTTGTCGAACCAGAGCCTGTCGTTGCGCAAGCTGCTCGGTAGCGCCCGTTGCCAGGCGCTGGCGCCGGCC 
AGGGCCGAACAGGAGCGCTTGCGCCAGGCCGGCCAGGGTTCGTTCCTCACGCCCTGCCGGATGGGTGCGCAG 
GAGGGCTGGCGGGTGACCGACAGCGCCTGTCCCAAGGACGGCGCCTGGTGCGTCGGCGCGGAGCGCGGGAAT 
TAG