ViewGene
Locus Name:
GeneID:
Location:

GeneID:5039
TrivialName: PA14_16610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16610
PAO1 Ortholog Locus:PA3694
Sequence Length:324
Protein Length:107
Start: 1421696
Stop: 1422019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07082.1|AE004789_2 (AE004789) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 107/107 (100%), Positives = 107/107 (100%)
Sequence:
ATGAGCGACCGTAACGTACTCCCCTGCATCCTGACCGGCATCGGTACCATCTTCGTCACCGTCGGCGTGCTC
TGGTACTACGGCTACCTGCATTTCGCCAAGCCGCAGGACGCCCTGTTGCTGGCCGACTTCACCATGCTGAAG
AGCCTGCCCGGCGAAGATGTGAAGCTGTCCCTGGAGCCGGCCAAGCAGGTCGCGCAGTGCATCGATGGCGTC
CTGGTGCTGTTCGACACCGAGCAGAAGGGCCTTTCCGGCGTGCTGGTGGACAACAGGAAGCACGCCGTGCGC
TGCGCCGGACAGGAAGTCCCGCAGGAAGTGAAATGA
Translation:
MSDRNVLPCILTGIGTIFVTVGVLWYYGYLHFAKPQDALLLADFTMLKSLPGEDVKLSLEPAKQVAQCIDGV
LVLFDTEQKGLSGVLVDNRKHAVRCAGQEVPQEVK*
AnnotationID:5044GeneID:5039
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:12
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3694
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55025.1| (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 106

 Score =  153 bits (386), Expect = 2e-37
 Identities = 69/103 (66%), Positives = 87/103 (84%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10078




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5039
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7445
                           PA3694_tr
                           translation of PA3694
                           107
                           99.99
                           99.99
                           0
                           554.0
     

     
     
192469
                           gb|AAG07082.1|AE004789_2
                           (AE004789) hypothetical protein PA3694 [Pseudomonas aeruginosa PAO1]
                           107
                           99.99
                           99.99
                           0
                           554.0
     

     
     
192470
                           gb|AAN67122.1|AE016341_5
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           108
                           73.14
                           87.96
                           1
                           441.0
     

     
     
192471
                           gb|AAO55025.1|
                           (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           108
                           63.88
                           80.55
                           3
                           385.0
     

     






      

          
GC ORFID: 48041How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3694Glimmer Score: 

          
Start: 3532241Stop: 3531918

          
Length: 324


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3694 translation of PA3694Homolog Bit Score 218.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4595 (ORF: BLASTX 149.0)

          
GC ORF Sequence

           
ATGAGCGACCGTAACGTACTCCCCTGCATCCTGACCGGCATCGGTACCATCTTCGTCACCGTCGGCGTGCTC 
TGGTACTACGGCTACCTGCATTTCGCCAAGCCGCAGGACGCCCTGTTGCTGGCCGACTTCACCATGCTGAAG 
AGCCTGCCCGGCGAAGATGTGAAGCTGTCCCTGGAGCCGGCCAAGCAGGTCGCGCAGTGCATCGATGGCGTC 
CTGGTGCTGTTCGACACCGAGCAGAAGGGCCTTTCCGGCGTGCTGGTGGACAACAGGAAGCACGCCGTGCGC 
TGCGCCGGACAGGAAGTCCCGCAGGAAGTGAAATGA