ViewGene

Locus Name:
GeneID:
Location:

GeneID:5037
TrivialName: PA14_39110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39110
PAO1 Ortholog Locus:PA1965
Sequence Length:336
Protein Length:111
Start: 3485360
Stop: 3485025
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05353.1|AE004623_3 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 109/111 (98%), Positives = 110/111 (99%)
Sequence:
ATGAAGCCCGCTGTTCTCCCCGCGTTGTTGGTTCTGTCGCTGCTGGGCGGTTGCGGGGATTCGTCGTCGGAC
CGGAAGGCGGCTTCCGGGCCGCTGGCGTTGCACTGCGGAGACTTCGGCAAACTCGAGGTGATCGACGGTTTC
GCCAGTCTCAAGCTGCCCGACGGCAGCAGCGTCCAGTCGCTGGGCGGTGATGTCCGCAGCCTCGCCGATGGC
CAGGCGCTGAGCGCGATTTCCTATAGCGACGGTTCGGTCCTGTACCGCCAGGCGGGCGACACACCCGGCTAC
CTGTACACGCCGGCCAAGGGCCAGCGGCAGGCCTGCGAGACGCGCTGA
Translation:
MKPAVLPALLVLSLLGGCGDSSSDRKAASGPLALHCGDFGKLEVIDGFASLKLPDGSSVQSLGGDVRSLADG
QALSAISYSDGSVLYRQAGDTPGYLYTPAKGQRQACETR*
AnnotationID:5042GeneID:5037
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1965
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10074
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27215
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5037

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7443 PA1965_tr translation of PA1965 111 98.19 99.09 0 556.0
192467 gb|AAG05353.1|AE004623_3 (AE004623) hypothetical protein PA1965 [Pseudomonas aeruginosa PAO1] 111 98.19 99.09 0 556.0
GC ORFID: 48039How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1965Glimmer Score:
Start: 1468551Stop: 1468886
Length: 336
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1965 translation of PA1965Homolog Bit Score 218.0
Other Homologs: t_PA1965 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCCCGCTGTTCTCCCCGCGTTGTTGGTTCTGTCGCTGCTGGGCGGTTGCGGGGATTCGTCGTCGGAC
CGGAAGGCGGCTTCCGGGCCGCTGGCGTTGCACTGCGGAGACTTCGGCAAACTCGAGGTGATCGACGGTTTC
GCCAGTCTCAAGCTGCCCGACGGCAGCAGCGTCCAGTCGCTGGGCGGTGATGTCCGCAGCCTCGCCGATGGC
CAGGCGCTGAGCGCGATTTCCTATAGCGACGGTTCGGTCCTGTACCGCCAGGCGGGCGACACACCCGGCTAC
CTGTACACGCCGGCCAAGGGCCAGCGGCAGGCCTGCGAGACGCGCTGA