ViewGene
Locus Name:
GeneID:
Location:

GeneID:5036
TrivialName: PA14_49230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49230
PAO1 Ortholog Locus:PA1175
Sequence Length:330
Protein Length:109
Start: 4372889
Stop: 4373218
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04564.1|AE004547_10 (AE004547) NapD protein of periplasmic nitrate reductase [Pseudomonas aeruginosa PAO1]
Identities = 109/109 (100%), Positives = 109/109 (100%)
Sequence:
ATGCCTGAAGCCCTGCAGATCGCCAGCCTCATCCTGCATTGCCGGCCCGAGCGACTGCCGGCGGTGAAGGCC
AACCTGGCGCTGCTCGACGGCCTGGAGATCTACCAGGAAAGCCCGCAGGGCAAGCTGATTCTGGTGCTGGAA
GCCGAACGCGAAGAACAGATTCTCGACACCCTGGGCCAGTTGCAGAACCTGCCAGGAGTGCTCAACGCCGTG
CTGGTCTACCACGAGATCCTGCACGACGACGATAGCAACGACGCGGCGGCCATGACCGACCGCGCGATACCG
TGCTCGCCCGAGGAGACAATCGATGAACCTCACCCGTCGTGA
Translation:
MPEALQIASLILHCRPERLPAVKANLALLDGLEIYQESPQGKLILVLEAEREEQILDTLGQLQNLPGVLNAV
LVYHEILHDDDSNDAAAMTDRAIPCSPEETIDEPHPS*
AnnotationID:5041GeneID:5036
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:53
Gene Name:napD
Confidence Code:2
GeneProduct:NapD protein of periplasmic nitrate reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism.
Homology:






 
Structural Features:






   
Genomic Context:
Third of six ORF cluster: napEFDABC.






   
Comment:


















    ReferenceID:10072




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27213




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5036
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7442
                           PA1175_tr
                           translation of PA1175
                           109
                           99.99
                           99.99
                           0
                           556.0
     

     
     
192466
                           gb|AAG04564.1|AE004547_10
                           (AE004547) NapD protein of periplasmic nitrate reductase [Pseudomonas aeruginosa PAO1]
                           109
                           99.99
                           99.99
                           0
                           556.0
     

     






      

          
GC ORFID: 48038How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1175Glimmer Score: 

          
Start: 581019Stop: 580690

          
Length: 330


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1175 translation of PA1175Homolog Bit Score 218.0

          
Other Homologs:  t_PA1175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGAAGCCCTGCAGATCGCCAGCCTCATCCTGCATTGCCGGCCCGAGCGACTGCCGGCGGTGAAGGCC 
AACCTGGCGCTGCTCGACGGCCTGGAGATCTACCAGGAAAGCCCGCAGGGCAAGCTGATTCTGGTGCTGGAA 
GCCGAACGCGAAGAACAGATTCTCGACACCCTGGGCCAGTTGCAGAACCTGCCAGGAGTGCTCAACGCCGTG 
CTGGTCTACCACGAGATCCTGCACGACGACGATAGCAACGACGCGGCGGCCATGACCGACCGCGCGATACCG 
TGCTCGCCCGAGGAGACAATCGATGAACCTCACCCGTCGTGA