ViewGene
Locus Name:
GeneID:
Location:

GeneID:5035
TrivialName: PA14_50720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50720
PAO1 Ortholog Locus:PA1055
Sequence Length:339
Protein Length:112
Start: 4505067
Stop: 4504729
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04444.1|AE004537_9 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGGAAGCCCTGTTCGCCATCACCCTCGGCCTGCTCACCGCCAGCGGCGTCTACCTGCTGCTGCGGGCGAGG
ACTTTCCCGGTGGTGCTCGGTCTCACGCTGATCTCCTACGCGGTCAACCTGTTCCTGTTCGCCATGGGCCGG
CTCGGCGGCAGCGTCGCGGTGATCGGCACTCCCGGGGAGTATGGCGACCCGCTGCCGCAGGCGCTGGTGCTG
ACCGCCATCGTCATCGGCTTCGCCATGACCGCCTTCGTCGTGGTCCTGGCCCTGCGTGGCCTCGGCGACCTC
GGCAGCGACCACGTAGATGGACGCCCGGACGAGGAGGAGCCGCGCCCATGA
Translation:
MEALFAITLGLLTASGVYLLLRARTFPVVLGLTLISYAVNLFLFAMGRLGGSVAVIGTPGEYGDPLPQALVL
TAIVIGFAMTAFVVVLALRGLGDLGSDHVDGRPDEEEPRP*
AnnotationID:5040GeneID:5035
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 15:03:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1055, phaC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1006
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1006, MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion 
transport and metabolism]
       CD-Length = 115 residues, 100.0% aligned
       Score =  106 bits (265), Expect = 7e-25






   
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog). 







   
Comment:


















    ReferenceID:10070




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32209




  
Author/Investigator(s):
        Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.





  
Title:
        The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.




  
PubMed:
        98343795


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5035
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7441
                           PA1055_tr
                           translation of PA1055
                           112
                           99.99
                           99.99
                           0
                           556.0
     

     
     
192449
                           gb|AAG04444.1|AE004537_9
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           556.0
     

     
     
192461
                           gb|AAO56947.1|
                           (AE016868) potassium efflux system protein PhaC [Pseudomonas syringae pv. tomato str. DC3000]
                           120
                           58.33
                           70.00
                           14
                           287.0
     

     
     
192455
                           emb|CAE28232.1|
                           (BX572602) pH adaptation K efflux system component [Rhodopseudomonas palustris CGA009]
                           120
                           56.66
                           69.16
                           15
                           299.0
     

     
     
192462
                           gb|AAN67842.1|AE016415_7
                           (AE016782) multicomponent potassium-proton antiporter, subunit C, putative [Pseudomonas putida KT2440]
                           120
                           55.00
                           69.16
                           14
                           283.0
     

     






      

          
GC ORFID: 48037How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1055Glimmer Score: 

          
Start: 448841Stop: 449179

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1055 translation of PA1055Homolog Bit Score 218.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1294 (ORF: BLASTX 112.0), t_PA1055 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAGCCCTGTTCGCCATCACCCTCGGCCTGCTCACCGCCAGCGGCGTCTACCTGCTGCTGCGGGCGAGG 
ACTTTCCCGGTGGTGCTCGGTCTCACGCTGATCTCCTACGCGGTCAACCTGTTCCTGTTCGCCATGGGCCGG 
CTCGGCGGCAGCGTCGCGGTGATCGGCACTCCCGGGGAGTATGGCGACCCGCTGCCGCAGGCGCTGGTGCTG 
ACCGCCATCGTCATCGGCTTCGCCATGACCGCCTTCGTCGTGGTCCTGGCCCTGCGTGGCCTCGGCGACCTC 
GGCAGCGACCACGTAGATGGACGCCCGGACGAGGAGGAGCCGCGCCCATGA